3BES
Structure of a Poxvirus ifngbp/ifng Complex
- PDB DOI: https://doi.org/10.2210/pdb3BES/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, Ectromelia virus
- Expression System: Escherichia coli, Drosophila melanogaster
- Mutation(s): No 
- Deposited: 2007-11-20 Released: 2008-02-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.245 
- R-Value Work: 0.219 
- R-Value Observed: 0.219 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Interferon gamma | A [auth L] | 139 | Homo sapiens | Mutation(s): 0  Gene Names: IFNG | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01579 (Homo sapiens) Explore P01579  Go to UniProtKB:  P01579 | |||||
PHAROS:  P01579 GTEx:  ENSG00000111537  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01579 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Interferon-gamma binding protein C4R | B [auth R] | 250 | Ectromelia virus | Mutation(s): 0  Gene Names: C4R, IFNGR | |
UniProt | |||||
Find proteins for Q66793 (Ectromelia virus) Explore Q66793  Go to UniProtKB:  Q66793 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q66793 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C [auth A] | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | E [auth R] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
PO4 Query on PO4 | D [auth L], F [auth R], G [auth R] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.245 
- R-Value Work: 0.219 
- R-Value Observed: 0.219 
- Space Group: I 2 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 92.63 | α = 90 |
b = 119.13 | β = 90 |
c = 184.74 | γ = 90 |
Software Name | Purpose |
---|---|
SERGUI | data collection |
CNS | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2008-02-12  Deposition Author(s): Nuara, A.A., Walter, M.R.
Revision History (Full details and data files)
- Version 1.0: 2008-02-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-01-24
Changes: Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary