3F3Y | pdb_00003f3y

Crystal structure of human cytosolic sulfotransferase SULT2A1 in complex with PAP and lithocholic acid

PDB DOI: https://doi.org/10.2210/pdb3F3Y/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-10-31 Released: 2009-09-15
Deposition Author(s): Pan, P.W., Dong, A., Amaya, M., Edwards, A.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.299 (Depositor), 0.296 (DCC)
R-Value Work:
0.236 (Depositor), 0.240 (DCC)
R-Value Observed:
0.238 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

rystal structure of human cytosolic sulfotransferase SULT2A1 in complex with PAP and lithocholic acid

Pan, P.W., Dong, A., Amaya, M., Edwards, A.M.

To be published.

Macromolecule Content

Total Structure Weight: 138.5 kDa
Atom Count: 9,927
Modeled Residue Count: 1,128
Deposited Residue Count: 1,140
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bile salt sulfotransferase	A, B, C, D	285	Homo sapiens	Mutation(s): 0 Gene Names: HST, STD, SULT2A1 EC: 2.8.2.14 (PDB Primary Data), 2.8.2.2 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q06520 (Homo sapiens) Explore Q06520 Go to UniProtKB: Q06520
PHAROS: Q06520 GTEx: ENSG00000105398
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q06520
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A3P Query on A3P Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain I [auth C] SDF format, chain K [auth D] SDF format, chain G [auth B] MOL2 format, chain F [auth A] MOL2 format, chain I [auth C] MOL2 format, chain K [auth D] MOL2 format, chain G [auth B] mmCIF format, chain F [auth A] mmCIF format, chain I [auth C] mmCIF format, chain K [auth D] mmCIF format, chain G [auth B]	F [auth A], G [auth B], I [auth C], K [auth D]	ADENOSINE-3'-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ WHTCPDAXWFLDIH-KQYNXXCUSA-N		Interactions Focus chain F [auth A] Focus chain G [auth B] Focus chain I [auth C] Focus chain K [auth D] Interactions & Density Focus chain F [auth A] Focus chain G [auth B] Focus chain I [auth C] Focus chain K [auth D]
4OA Query on 4OA Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth B] SDF format, chain J [auth C] SDF format, chain L [auth D] MOL2 format, chain E [auth A] MOL2 format, chain H [auth B] MOL2 format, chain J [auth C] MOL2 format, chain L [auth D] mmCIF format, chain E [auth A] mmCIF format, chain H [auth B] mmCIF format, chain J [auth C] mmCIF format, chain L [auth D]	E [auth A], H [auth B], J [auth C], L [auth D]	(3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid C₂₄ H₄₀ O₃ SMEROWZSTRWXGI-HVATVPOCSA-N		Interactions Focus chain E [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain L [auth D] Interactions & Density Focus chain E [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain L [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.299 (Depositor), 0.296 (DCC)
R-Value Work: 0.236 (Depositor), 0.240 (DCC)
R-Value Observed: 0.238 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.393	α = 90
b = 96.179	β = 90
c = 159.298	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
PHASER	phasing
REFMAC	refinement
Coot	model building
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2009-09-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2009-09-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations

3F3Y | pdb_00003f3y

Crystal structure of human cytosolic sulfotransferase SULT2A1 in complex with PAP and lithocholic acid

Literature

rystal structure of human cytosolic sulfotransferase SULT2A1 in complex with PAP and lithocholic acid

Biological Assembly 1

Biological Assembly 2

Macromolecules

Entity ID: 1

UniProt & NIH Common Fund Data Resources

Entity Groups

Sequence Annotations

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