Mapping Binding Pocket Volume: Potential Applications towards Ligand Design and Selectivity
Arora, N., Williams, C., Delano, W., Will, D., Kuglstatter, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Mitogen-activated protein kinase 14 | 372 | Homo sapiens | Mutation(s): 0 Gene Names: CSBP, CSBP1, CSBP2, CSPB1, MAPK14, MXI2 EC: 2.7.11.24 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16539 (Homo sapiens) Explore Q16539 Go to UniProtKB: Q16539 | |||||
PHAROS: Q16539 GTEx: ENSG00000112062 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16539 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RO6 Query on RO6 | B [auth A] | 3-(2-chlorophenyl)-7-[(trans-4-hydroxycyclohexyl)amino]-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one C18 H20 Cl N5 O2 NSHBSERFNQQOCC-JOCQHMNTSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 45.4 | α = 90 |
b = 85.4 | β = 90 |
c = 125.2 | γ = 90 |
Software Name | Purpose |
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ADSC | data collection |
CNS | refinement |
CNX | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |