Download MendeleyCrystal Structure of Spin Labeled T4 Lysozyme Mutant K65V1/R76V1
Toledo Warshaviak, D., Cascio, D., Khramtsov, V.V., Hubbell, W.L.To be published.
3K2R
Crystal Structure of Spin Labeled T4 Lysozyme Mutant K65V1/R76V1
- PDB DOI: https://doi.org/10.2210/pdb3K2R/pdb
- Classification: HYDROLASE
- Organism(s): Tequatrovirus T4
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2009-09-30 Released: 2010-10-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.212
- R-Value Work: 0.197
- R-Value Observed: 0.198
Starting Model: experimental
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This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme | 164 | Tequatrovirus T4 | Mutation(s): 4 Gene Names: E, Lysozyme EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for P00720 (Enterobacteria phage T4) Explore P00720 Go to UniProtKB: P00720 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00720 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| V1A Query on V1A | B [auth A], D [auth A] | S-(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-imidazol-4-yl) methanesulfonothioate C8 H15 N2 O3 S2 GGUBULNJTWFONN-UHFFFAOYSA-N |  | ||
| HEZ Query on HEZ | C [auth A], E [auth A] | HEXANE-1,6-DIOL C6 H14 O2 XXMIOPMDWAUFGU-UHFFFAOYSA-N |  | ||
| K Query on K | H [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth A], G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.212
- R-Value Work: 0.197
- R-Value Observed: 0.198
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.547 | α = 90 |
| b = 59.547 | β = 90 |
| c = 95.28 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2010-10-13 Deposition Author(s): Toledo Warshaviak, D., Cascio, D., Khramtsov, V.V., Hubbell, W.L.
Revision History (Full details and data files)
- Version 1.0: 2010-10-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2012-02-29
Changes: Other - Version 1.3: 2017-11-01
Changes: Advisory, Refinement description - Version 1.4: 2023-09-06
Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description - Version 1.5: 2024-11-06
Changes: Structure summary
