3NJ8

Crystal structure of T. gondii enoyl acyl carrier protein reductase with bound triclosan like inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.274 
  • R-Value Observed: 0.276 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Identification and development of novel inhibitors of Toxoplasma gondii enoyl reductase.

Tipparaju, S.K.Muench, S.P.Mui, E.J.Ruzheinikov, S.N.Lu, J.Z.Hutson, S.L.Kirisits, M.J.Prigge, S.T.Roberts, C.W.Henriquez, F.L.Kozikowski, A.P.Rice, D.W.McLeod, R.L.

(2010) J Med Chem 53: 6287-6300

  • DOI: https://doi.org/10.1021/jm9017724
  • Primary Citation of Related Structures:  
    3NJ8

  • PubMed Abstract: 

    Toxoplasmosis causes significant morbidity and mortality, and yet available medicines are limited by toxicities and hypersensitivity. Because improved medicines are needed urgently, rational approaches were used to identify novel lead compounds effective against Toxoplasma gondii enoyl reductase (TgENR), a type II fatty acid synthase enzyme essential in parasites but not present in animals. Fifty-three compounds, including three classes that inhibit ENRs, were tested. Six compounds have antiparasite MIC(90)s < or = 6 microM without toxicity to host cells, three compounds have IC(90)s < 45 nM against recombinant TgENR, and two protect mice. To further understand the mode of inhibition, the cocrystal structure of one of the most promising candidate compounds in complex with TgENR has been determined to 2.7 A. The crystal structure reveals that the aliphatic side chain of compound 19 occupies, as predicted, space made available by replacement of a bulky hydrophobic residue in homologous bacterial ENRs by Ala in TgENR. This provides a paradigm, conceptual foundation, reagents, and lead compounds for future rational development and discovery of improved inhibitors of T. gondii.


  • Organizational Affiliation

    Drug Discovery Program, Department of Medicinal Chemistry and Pharmacognosy, University of Illinois at Chicago, Chicago, Illinois, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Enoyl-acyl carrier reductase
A, B
315Toxoplasma gondiiMutation(s): 0 
Gene Names: Enoyl reductaseENR
EC: 1.3.1.9
UniProt
Find proteins for Q6UCJ9 (Toxoplasma gondii)
Explore Q6UCJ9 
Go to UniProtKB:  Q6UCJ9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UCJ9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.322 
  • R-Value Work: 0.274 
  • R-Value Observed: 0.276 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.256α = 90
b = 78.256β = 90
c = 189.077γ = 120
Software Package:
Software NamePurpose
ADSCdata collection
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-09-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2014-12-17
    Changes: Structure summary
  • Version 1.3: 2024-02-21
    Changes: Data collection, Database references, Derived calculations