3QC8 | pdb_00003qc8

Crystal Structure of FAF1 UBX Domain In Complex with p97/VCP N Domain Reveals The Conserved FcisP Touch-Turn Motif of UBX Domain Suffering Conformational Change

PDB DOI: https://doi.org/10.2210/pdb3QC8/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-01-15 Released: 2011-07-20
Deposition Author(s): Kim, K.H., Kang, W., Suh, S.W., Yang, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.250 (Depositor), 0.235 (DCC)
R-Value Work:
0.216 (Depositor), 0.204 (DCC)
R-Value Observed:
0.218 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3QC8

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of FAF1 UBX domain in complex with p97/VCP N domain reveals a conformational change in the conserved FcisP touch-turn motif of UBX domain

Kim, K.H., Kang, W., Suh, S.W., Yang, J.K.

(2011) Proteins 79: 2583-2587

PubMed: 21739474 Search on PubMed
DOI: https://doi.org/10.1002/prot.23073
Primary Citation Related Structures:
3QC8

Organizational Affiliation

Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul, Korea.

Macromolecule Content

Total Structure Weight: 30.12 kDa
Atom Count: 2,148
Modeled Residue Count: 250
Deposited Residue Count: 262
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transitional endoplasmic reticulum ATPase	A	178	Homo sapiens	Mutation(s): 0 Gene Names: VCP EC: 3.6.4.6
UniProt & NIH Common Fund Data Resources
Find proteins for P55072 (Homo sapiens) Explore P55072 Go to UniProtKB: P55072
PHAROS: P55072 GTEx: ENSG00000165280
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P55072
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
FAS-associated factor 1	B	84	Homo sapiens	Mutation(s): 0 Gene Names: FAF1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UNN5 (Homo sapiens) Explore Q9UNN5 Go to UniProtKB: Q9UNN5
PHAROS: Q9UNN5 GTEx: ENSG00000185104
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UNN5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.250 (Depositor), 0.235 (DCC)
R-Value Work: 0.216 (Depositor), 0.204 (DCC)
R-Value Observed: 0.218 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.07	α = 90
b = 72.74	β = 90
c = 130.59	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
PHASER	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-07-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-07-20
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.