3R9I

2.6A resolution structure of MinD complexed with MinE (12-31) peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 
    0.243 (Depositor), 0.230 (DCC) 
  • R-Value Work: 
    0.201 (Depositor), 0.190 (DCC) 
  • R-Value Observed: 
    0.203 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 

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This is version 1.1 of the entry. See complete history


Literature

The Min Oscillator Uses MinD-Dependent Conformational Changes in MinE to Spatially Regulate Cytokinesis.

Park, K.T.Wu, W.Battaile, K.P.Lovell, S.Holyoak, T.Lutkenhaus, J.

(2011) Cell 146: 396-407

  • DOI: https://doi.org/10.1016/j.cell.2011.06.042
  • Primary Citation of Related Structures:  
    3R9I, 3R9J

  • PubMed Abstract: 

    In E. coli, MinD recruits MinE to the membrane, leading to a coupled oscillation required for spatial regulation of the cytokinetic Z ring. How these proteins interact, however, is not clear because the MinD-binding regions of MinE are sequestered within a six-stranded β sheet and masked by N-terminal helices. minE mutations that restore interaction between some MinD and MinE mutants were isolated. These mutations alter the MinE structure leading to release of the MinD-binding regions and the N-terminal helices that bind the membrane. Crystallization of MinD-MinE complexes revealed a four-stranded β sheet MinE dimer with the released β strands (MinD-binding regions) converted to α helices bound to MinD dimers. These results identify the MinD-dependent conformational changes in MinE that convert it from a latent to an active form and lead to a model of how MinE persists at the MinD-membrane surface.


  • Organizational Affiliation

    Department of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, KS 66160, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Septum site-determining protein minD
A, B, C, D
260Escherichia coli K-12Mutation(s): 1 
Gene Names: b1175JW1164minD
UniProt
Find proteins for P0AEZ3 (Escherichia coli (strain K12))
Explore P0AEZ3 
Go to UniProtKB:  P0AEZ3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AEZ3
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division topological specificity factor
E, F, G, H
20Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P0A734 (Escherichia coli (strain K12))
Explore P0A734 
Go to UniProtKB:  P0A734
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A734
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free:  0.243 (Depositor), 0.230 (DCC) 
  • R-Value Work:  0.201 (Depositor), 0.190 (DCC) 
  • R-Value Observed: 0.203 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.293α = 102.64
b = 71.796β = 95.87
c = 76.644γ = 111.72
Software Package:
Software NamePurpose
SCALAdata scaling
MOLREPphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
JDirectordata collection
XSCALEdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ADPClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-08-17
    Type: Initial release
  • Version 1.1: 2023-09-13
    Changes: Data collection, Database references, Derived calculations, Refinement description