3G9V

Crystal structure of a soluble decoy receptor IL-22BP bound to interleukin-22


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.216 

Starting Model: experimental
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This is version 1.3 of the entry. See complete history


Literature

Crystal structure of a soluble decoy receptor IL-22BP bound to interleukin-22

de Moura, P.R.Watanabe, L.Bleicher, L.Colau, D.Dumoutier, L.Lemaire, M.M.Renauld, J.-C.Polikarpov, I.

(2009) FEBS Lett 583: 1072-1077

  • DOI: https://doi.org/10.1016/j.febslet.2009.03.006
  • Primary Citation of Related Structures:  
    3G9V

  • PubMed Abstract: 

    Interleukin-22 (IL-22) plays an important role in the regulation of immune and inflammatory responses in mammals. The IL-22 binding protein (IL-22BP), a soluble receptor that specifically binds IL-22, prevents the IL-22/interleukin-22 receptor 1 (IL-22R1)/interleukin-10 receptor 2 (IL-10R2) complex assembly and blocks IL-22 biological activity. Here we present the crystal structure of the IL-22/IL-22BP complex at 2.75 A resolution. The structure reveals IL-22BP residues critical for IL-22 binding, which were confirmed by site-directed mutagenesis and functional studies. Comparison of IL-22/IL-22BP and IL-22/IL-22R1 crystal structures shows that both receptors display an overlapping IL-22 binding surface, which is consistent with the inhibitory role played by IL-22 binding protein.


  • Organizational Affiliation

    Instituto de Física de São Carlos, Universidade de São Paulo, São Carlos 13560-970, SP, Brazil.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin 22 receptor, alpha 2
A, C
211Homo sapiensMutation(s): 0 
Gene Names: IL22RA2
UniProt & NIH Common Fund Data Resources
Find proteins for Q969J5 (Homo sapiens)
Explore Q969J5 
Go to UniProtKB:  Q969J5
PHAROS:  Q969J5
GTEx:  ENSG00000164485 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ969J5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-22
B, D
151Homo sapiensMutation(s): 0 
Gene Names: IL22
UniProt & NIH Common Fund Data Resources
Find proteins for Q9GZX6 (Homo sapiens)
Explore Q9GZX6 
Go to UniProtKB:  Q9GZX6
PHAROS:  Q9GZX6
GTEx:  ENSG00000127318 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9GZX6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.216 
  • Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.948α = 90
b = 67.948β = 90
c = 172.533γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-04-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-11-01
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-10-30
    Changes: Structure summary