43MI | pdb_000043mi

Yeast-expressed polio type 3 stabilized virus-like particles


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 43MI

This is version 1.0 of the entry. See complete history

Literature

High-yield production of immunogenic PV3 virus-like particle in yeast.

Chen, T.Hong, Q.Han, W.Wang, S.Lin, C.Yao, J.Lian, C.Liu, Q.Wang, X.Zhou, Y.Cong, Y.Huang, Z.

(2026) Antiviral Res 255: 106530-106530

  • DOI: https://doi.org/10.1016/j.antiviral.2026.106530
  • Primary Citation Related Structures: 
    43MI, 43MU

  • PubMed Abstract: 

    The identification of thermally stabilized mutants of all three poliovirus serotypes (PV1, PV2, and PV3) has enabled the development of virus-like particle (VLP)-based next-generation poliovirus vaccines. PV3 stabilized mutant-derived VLPs (sVLPs) have been produced in several recombinant systems through co-expression of mutant P1 polyprotein with native or uncleavable viral protease 3CD, and have shown immunogenicity in animal models. However, their yields remain suboptimal, likely because of intrinsic 3CD toxicity and/or inefficient 3CD-mediated cleavage of P1 into capsid subunits VP0, VP3, and VP1, creating a bottleneck for cost-effective product development. In this study, we designed a protease-independent expression strategy based on simultaneous co-expression of VP0, VP3, and VP1 capsid subunit (VP0/VP3/VP1) and compared it with the conventional P1/3CD co-expression approach for production of PV3 sVLP and wildtype VLP (wtVLP) in Pichia pastoris. For each VLP type, the VP0/VP3/VP1 strategy in general enhances target protein expression and D-antigen formation compared with P1/3CD co-expression. The PV3 sVLP produced by the VP0/VP3/VP1 strategy possesses higher levels of D-antigen and significantly enhanced thermostability than the corresponding wtVLP. Moreover, structural and immunological analyses reveal that PV3 sVLP, but not wtVLP, adopts a native conformation and potently elicits neutralizing antibodies in a mouse model. These findings not only confirm yeast-produced PV3 sVLP as a promising vaccine candidate, but also establish a high-yield and scalable expression strategy amenable to further development and industrial-level production of sVLP-based next-generation polio vaccines.


  • Organizational Affiliation
    • Shanghai Institute of Infectious Disease and Biosecurity, Fudan University, Shanghai, China.

Macromolecule Content 

  • Total Structure Weight: 90.07 kDa 
  • Atom Count: 5,687 
  • Modeled Residue Count: 721 
  • Deposited Residue Count: 809 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
VP1300Poliovirus 3Mutation(s): 0 
UniProt
Find proteins for Q84895 (Poliovirus 3)
Explore Q84895 
Go to UniProtKB:  Q84895
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ84895
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
VP2B [auth C]271Poliovirus 3Mutation(s): 0 
UniProt
Find proteins for Q84895 (Poliovirus 3)
Explore Q84895 
Go to UniProtKB:  Q84895
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ84895
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
VP3C [auth D]238Poliovirus 3Mutation(s): 0 
UniProt
Find proteins for Q84895 (Poliovirus 3)
Explore Q84895 
Go to UniProtKB:  Q84895
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ84895
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION4.0

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32130056
National Natural Science Foundation of China (NSFC)China32570924

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-16
    Type: Initial release