4BWN | pdb_00004bwn

NEMO CC2-LZ DOMAIN

PDB DOI: https://doi.org/10.2210/pdb4BWN/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2013-07-03 Released: 2014-07-23
Deposition Author(s): Dubosclard, V., Duquerroy, S., Fontan, E., Agou, F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free:
0.246 (Depositor), 0.248 (DCC)
R-Value Work:
0.215 (Depositor), 0.226 (DCC)
R-Value Observed:
0.216 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 4BWN

This is version 1.3 of the entry. See complete history.

Literature

High-Resolution of Crystal Structure of the Human Cc2-Lz Domain of Nemo by Protein Engineering

Dubosclard, V., Duquerroy, S., Fontan, E., Agou, F.

To be published.

Macromolecule Content

Total Structure Weight: 25.62 kDa
Atom Count: 1,449
Modeled Residue Count: 172
Deposited Residue Count: 220
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NF-KAPPA-B ESSENTIAL MODULATOR	A, B	110	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6K9 (Homo sapiens) Explore Q9Y6K9 Go to UniProtKB: Q9Y6K9
PHAROS: Q9Y6K9 GTEx: ENSG00000269335
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9Y6K9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free: 0.246 (Depositor), 0.248 (DCC)
R-Value Work: 0.215 (Depositor), 0.226 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.353	α = 90
b = 70.353	β = 90
c = 78.981	γ = 120

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-07-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-07-23
Type: Initial release
Version 1.1: 2014-10-29
Changes: Refinement description
Version 1.2: 2021-04-28
Changes: Data collection, Other
Version 1.3: 2023-12-20
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.