Crystal structures and kinetic properties of anabolic ornithine carbamoyltransferase from human pathogens Vibrio vulnificus and Bacillus anthracis
Shabalin, I.G., Winsor, J., Grimshaw, S., Minor, W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ornithine carbamoyltransferase | 358 | Vibrio vulnificus CMCP6 | Mutation(s): 0  Gene Names: argF, VV1_1466 EC: 2.1.3.3 | ||
UniProt | |||||
Find proteins for Q8DCF5 (Vibrio vulnificus (strain CMCP6)) Explore Q8DCF5  Go to UniProtKB:  Q8DCF5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8DCF5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CIR Query on CIR | E [auth A], K [auth B], P [auth C] | CITRULLINE C6 H13 N3 O3 RHGKLRLOHDJJDR-BYPYZUCNSA-N | |||
PEG Query on PEG | G [auth A] H [auth A] I [auth A] M [auth B] N [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
PO4 Query on PO4 | D [auth A], J [auth B], O [auth C] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
CL Query on CL | F [auth A], L [auth B], Q [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 81.418 | α = 90 |
b = 82.597 | β = 90 |
c = 171.968 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-3000 | data collection |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
HKL-3000 | phasing |
MOLREP | phasing |
CCP4 | phasing |
Coot | model building |