5F4X | pdb_00005f4x

Fructose-1,6-bisphosphate aldolase K229M mutant from rabbit muscle

PDB DOI: https://doi.org/10.2210/pdb5F4X/pdb

Classification: LYASE
Organism(s): Oryctolagus cuniculus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2015-12-03 Released: 2016-12-28
Deposition Author(s): LowKam, C., Arthus-Cartier, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.84 Å
R-Value Free:
0.174 (Depositor), 0.176 (DCC)
R-Value Work:
0.146 (Depositor), 0.149 (DCC)
R-Value Observed:
0.146 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

DECYCLIZATION DETERMINES DIASTEREOISOMERIC SUBSTRATE SPECIFICITY OF MAMMALIAN CLASS I FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE

LowKam, C., Arthus-Cartier, G., Sygusch, J.

To be published.

Macromolecule Content

Total Structure Weight: 157.25 kDa
Atom Count: 12,912
Modeled Residue Count: 1,452
Deposited Residue Count: 1,452
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-bisphosphate aldolase A	A, B, C, D	363	Oryctolagus cuniculus	Mutation(s): 1 Gene Names: ALDOA EC: 4.1.2.13
UniProt
Find proteins for P00883 (Oryctolagus cuniculus) Explore P00883 Go to UniProtKB: P00883
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00883
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain F [auth D] MOL2 format, chain E [auth B] MOL2 format, chain F [auth D] mmCIF format, chain E [auth B] mmCIF format, chain F [auth D]	E [auth B], F [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain E [auth B] Focus chain F [auth D] Interactions & Density Focus chain E [auth B] Focus chain F [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.84 Å
R-Value Free: 0.174 (Depositor), 0.176 (DCC)
R-Value Work: 0.146 (Depositor), 0.149 (DCC)
R-Value Observed: 0.146 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.477	α = 90
b = 103.194	β = 98.66
c = 84.527	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-12-28

Deposition Author(s):

Arthus-Cartier, G.

Revision History (Full details and data files)

Version 1.0: 2016-12-28
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.