5FPW | pdb_00005fpw

proCathepsin B S9 from Trypanosoma congolense

• PDB DOI: https://doi.org/10.2210/pdb5FPW/pdb

• Classification: HYDROLASE
• Organism(s): Trypanosoma congolense
• Expression System: Komagataella pastoris
• Mutation(s): Yes 


• Deposited: 2015-12-03 Released: 2016-02-17 
• Deposition Author(s): Sevajol, M., Biteau, N., Baltz, T., Franzetti, B., Vellieux, F.M.D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.216 (Depositor), 0.216 (DCC) 
• R-Value Work: 
  0.179 (Depositor), 0.179 (DCC) 
• R-Value Observed: 
  0.181 (Depositor) 

Literature

2.1 Angstrom Crystal Structure of Pro Cathepsin B S9 from Trypanosoma Congolense

Sevajol, M., Biteau, N., Baltz, T., Franzetti, B., Vellieux, F.M.D.

(null) Ph D Thesis 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 108.2 kDa 
• Atom Count: 7,566 
• Modelled Residue Count: 880 
• Deposited Residue Count: 963 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PRO CATHEPSIN B S9	A, B, C	321	Trypanosoma congolense	Mutation(s): 2  EC: 3.4.22.1
UniProt
Find proteins for B2C331 (Trypanosoma congolense) Explore B2C331  Go to UniProtKB:  B2C331

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.216 (Depositor), 0.216 (DCC) 
• R-Value Work:  0.179 (Depositor), 0.179 (DCC) 
• R-Value Observed: 0.181 (Depositor) 

Space Group: C 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 128.79	α = 90
b = 223.22	β = 90
c = 102.89	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-02-17 
Deposition Author(s): Sevajol, M., Biteau, N., Baltz, T., Franzetti, B., Vellieux, F.M.D.

Revision History  

• Version 1.0: 2016-02-17
  Type: Initial release
  
• Version 2.0: 2019-03-06
  Changes: Advisory, Atomic model, Data collection, Experimental preparation, Other
• Version 2.1: 2024-10-23
  Changes: Advisory, Data collection, Database references, Other, Structure summary