5H33 | pdb_00005h33

Structural basis for dimerization of the death effector domains of Caspase-8

PDB DOI: https://doi.org/10.2210/pdb5H33/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2016-10-20 Released: 2017-10-25
Deposition Author(s): Shen, C., Pei, J., Guo, X., Quan, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free:
0.313 (Depositor), 0.318 (DCC)
R-Value Work:
0.280 (Depositor), 0.281 (DCC)
R-Value Observed:
0.283 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 5H33

This is version 1.1 of the entry. See complete history.

Literature

Structural basis for dimerization of the death effector domains of Caspase-8

Shen, C., Pei, J., Guo, X., Zhou, L., Li, Q., Quan, J.

To be published.

Macromolecule Content

Total Structure Weight: 44.69 kDa
Atom Count: 3,014
Modeled Residue Count: 362
Deposited Residue Count: 376
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Caspase-8	A, B	188	Homo sapiens	Mutation(s): 1 Gene Names: CASP8, MCH5 EC: 3.4.22.61
UniProt & NIH Common Fund Data Resources
Find proteins for Q14790 (Homo sapiens) Explore Q14790 Go to UniProtKB: Q14790
PHAROS: Q14790 GTEx: ENSG00000064012
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q14790
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free: 0.313 (Depositor), 0.318 (DCC)
R-Value Work: 0.280 (Depositor), 0.281 (DCC)
R-Value Observed: 0.283 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.42	α = 90
b = 50.94	β = 105.236
c = 90.444	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
CrystalClear	data reduction
d*TREK	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-10-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-10-25
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.