5HPE | pdb_00005hpe

Phosphatase domain of PP5 bound to a phosphomimetic Cdc37 substrate peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 
    0.236 (Depositor), 0.235 (DCC) 
  • R-Value Work: 
    0.168 (Depositor), 0.171 (DCC) 
  • R-Value Observed: 
    0.175 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 5HPE

This is version 1.3 of the entry. See complete history

Literature

Structural and functional basis of protein phosphatase 5 substrate specificity.

Oberoi, J.Dunn, D.M.Woodford, M.R.Mariotti, L.Schulman, J.Bourboulia, D.Mollapour, M.Vaughan, C.K.

(2016) Proc Natl Acad Sci U S A 113: 9009-9014

  • DOI: https://doi.org/10.1073/pnas.1603059113
  • Primary Citation Related Structures: 
    5HPE

  • PubMed Abstract: 

    The serine/threonine phosphatase protein phosphatase 5 (PP5) regulates hormone- and stress-induced cellular signaling by association with the molecular chaperone heat shock protein 90 (Hsp90). PP5-mediated dephosphorylation of the cochaperone Cdc37 is essential for activation of Hsp90-dependent kinases. However, the details of this mechanism remain unknown. We determined the crystal structure of a Cdc37 phosphomimetic peptide bound to the catalytic domain of PP5. The structure reveals PP5 utilization of conserved elements of phosphoprotein phosphatase (PPP) structure to bind substrate and provides a template for many PPP-substrate interactions. Our data show that, despite a highly conserved structure, elements of substrate specificity are determined within the phosphatase catalytic domain itself. Structure-based mutations in vivo reveal that PP5-mediated dephosphorylation is required for kinase and steroid hormone receptor release from the chaperone complex. Finally, our data show that hyper- or hypoactivity of PP5 mutants increases Hsp90 binding to its inhibitor, suggesting a mechanism to enhance the efficacy of Hsp90 inhibitors by regulation of PP5 activity in tumors.


  • Organizational Affiliation
    • Institute of Structural and Molecular Biology, Biological Sciences, University College London and Birkbeck College, London WC1E 7HX, United Kingdom;

Macromolecule Content 

  • Total Structure Weight: 40.2 kDa 
  • Atom Count: 2,747 
  • Modeled Residue Count: 326 
  • Deposited Residue Count: 350 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Serine/threonine-protein phosphatase 5,Hsp90 co-chaperone Cdc37350Homo sapiensMutation(s): 1 
Gene Names: PPP5CPPP5CDC37
EC: 3.1.3.16
UniProt & NIH Common Fund Data Resources
Find proteins for P53041 (Homo sapiens)
Explore P53041 
Go to UniProtKB:  P53041
PHAROS:  P53041
GTEx:  ENSG00000011485 
Find proteins for Q16543 (Homo sapiens)
Explore Q16543 
Go to UniProtKB:  Q16543
PHAROS:  Q16543
GTEx:  ENSG00000105401 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP53041Q16543
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free:  0.236 (Depositor), 0.235 (DCC) 
  • R-Value Work:  0.168 (Depositor), 0.171 (DCC) 
  • R-Value Observed: 0.175 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.314α = 90
b = 65.164β = 90
c = 132.117γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2016-07-27
    Type: Initial release
  • Version 1.1: 2016-08-10
    Changes: Database references
  • Version 1.2: 2016-08-24
    Changes: Database references
  • Version 1.3: 2024-01-10
    Changes: Data collection, Database references, Refinement description