5I6S

Crystal structure of an endoglucanase from Penicillium verruculosum

• PDB DOI: https://doi.org/10.2210/pdb5I6S/pdb

• Classification: HYDROLASE
• Organism(s): Talaromyces verruculosus
• Mutation(s): No 


• Deposited: 2016-02-16 Released: 2017-03-01 
• Deposition Author(s): Nemashklaov, V., Vakhrusheva, A., Tishchenko, S., Gabdulkhakov, A., Kravchenko, O., Gusakov, A., Sinitsyn, A.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.218 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.220 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of an endoglucanase from Penicillium verruculosum

Nemashklaov, V., Vakhrusheva, A., Tishchenko, S., Gabdulkhakov, A., Kravchenko, O., Klyadhtorny, V., Gusakov, A., Sinitsyn, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 34.19 kDa 
• Atom Count: 2,574 
• Modelled Residue Count: 305 
• Deposited Residue Count: 305 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
endoglucanase	A	305	Talaromyces verruculosus	Mutation(s): 0  EC: 3.2.1.4
UniProt
Find proteins for A0A1U7Q1U3 (Talaromyces verruculosus) Explore A0A1U7Q1U3  Go to UniProtKB:  A0A1U7Q1U3
Glycosylation
Glycosylation Sites: 1

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	B	3		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.218 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.220 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.819	α = 90
b = 83.819	β = 90
c = 89.044	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PROTEUM PLUS	data reduction
PROTEUM PLUS	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-03-01 
Deposition Author(s): Nemashklaov, V., Vakhrusheva, A., Tishchenko, S., Gabdulkhakov, A., Kravchenko, O., Gusakov, A., Sinitsyn, A.

Revision History  

• Version 1.0: 2017-03-01
  Type: Initial release
  
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary
• Version 2.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description, Structure summary
• Version 2.2: 2024-10-23
  Changes: Structure summary