5L6X | pdb_00005l6x

CRYSTAL STRUCTURE OF HGSTP1-1 COMPLEXED WITH FERROCENE-GLUTATHIONE CONJUGATE

• PDB DOI: https://doi.org/10.2210/pdb5L6X/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2016-06-01 Released: 2017-06-28 
• Deposition Author(s): Lopez-Jaramillo, F.J., Garcia-Fuentes, L., Vargas-Berenguel, A.
• Funding Organization(s): Spanish Ministry of Economy and Competitiveness, Marie Sklodowska-Curie ITN program

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.213 (Depositor), 0.208 (DCC) 
• R-Value Work: 
  0.181 (Depositor), 0.176 (DCC) 

Starting Model: experimental

Literature

CRYSTAL STRUCTURE OF HGSTP1-1 COMPLEXED WITH FERROCENE-GLUTATHIONE CONJUGATE

Lopez-Jaramillo, F.J., Vargas-Berenguel, A., Garcia-Fuentes, L.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 48.29 kDa 
• Atom Count: 3,768 
• Modeled Residue Count: 418 
• Deposited Residue Count: 420 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase P	A, B	210	Homo sapiens	Mutation(s): 1  Gene Names: GSTP1, FAEES3, GST3 EC: 2.5.1.18
UniProt & NIH Common Fund Data Resources
Find proteins for P09211 (Homo sapiens) Explore P09211  Go to UniProtKB:  P09211
GTEx:  ENSG00000084207

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
6SG	I [auth A], O [auth B]	S-[N-(ferrocenylmethyl)carbamoylmethyl]-glutathione C23 H30 Fe N4 O7 S RJXYBKRUDOEOPN-KIQGZJGMSA-N
AZI	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], J [auth B], K [auth B], L [auth B], M [auth B], N [auth B]	AZIDE ION N3 IVRMZWNICZWHMI-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.213 (Depositor), 0.208 (DCC) 
• R-Value Work:  0.181 (Depositor), 0.176 (DCC) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.023	α = 90
b = 89.41	β = 97.816
c = 68.604	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
SAINT	data scaling
PDB_EXTRACT	data extraction
SAINT	data reduction
CNS	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2017-06-28 
Deposition Author(s): Lopez-Jaramillo, F.J., Garcia-Fuentes, L., Vargas-Berenguel, A.

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Funding Organization	Location	Grant Number
Spanish Ministry of Economy and Competitiveness	Spain	CTQ2013-48380-R
Marie Sklodowska-Curie ITN program		CYCLON Hit 608407
Spanish Ministry of Economy and Competitiveness	Spain	CTQ2014-55474-C2-1-R

Revision History  

• Version 1.0: 2017-06-28
  Type: Initial release
  
• Version 1.1: 2017-09-06
  Changes: Author supporting evidence
• Version 2.0: 2019-11-06
  Changes: Atomic model, Data collection
• Version 2.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description
• Version 3.0: 2026-08-26
  Type: Remediation
  Reason: Metalloprotein remediation
  Changes: Data collection, Derived calculations, Non-polymer description, Structure summary