5MOB

ABA RECEPTOR FROM TOMATO, SlPYL1

PDB DOI: https://doi.org/10.2210/pdb5MOB/pdb

Classification: SIGNALING PROTEIN
Organism(s): Solanum lycopersicum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-12-14 Released: 2017-08-02
Deposition Author(s): Moreno-Alvero, M., Yunta, C., Gonzalez-Guzman, M., Arbona, V., Granell, A., Martinez-Ripoll, M., Infantes, L., Rodriguez, P.L., Albert, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.67 Å
R-Value Free:
0.222 (Depositor), 0.220 (DCC)
R-Value Work:
0.191 (Depositor), 0.190 (DCC)
R-Value Observed:
0.193 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

Structure of Ligand-Bound Intermediates of Crop ABA Receptors Highlights PP2C as Necessary ABA Co-receptor.

Moreno-Alvero, M., Yunta, C., Gonzalez-Guzman, M., Lozano-Juste, J., Benavente, J.L., Arbona, V., Menendez, M., Martinez-Ripoll, M., Infantes, L., Gomez-Cadenas, A., Rodriguez, P.L., Albert, A.

(2017) Mol Plant 10: 1250-1253

PubMed: 28736053 Search on PubMed
DOI: https://doi.org/10.1016/j.molp.2017.07.004
Primary Citation of Related Structures:
5MMQ, 5MMX, 5MN0, 5MOA, 5MOB

Organizational Affiliation

Instituto de Química Física Rocasolano, Consejo Superior de Investigaciones Científicas, 28006 Madrid, Spain.

Macromolecule Content

Total Structure Weight: 26.1 kDa
Atom Count: 1,711
Modelled Residue Count: 193
Deposited Residue Count: 232
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SlPYL1_ABA	A	232	Solanum lycopersicum	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A8S Query on A8S Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid C₁₅ H₂₀ O₄ JLIDBLDQVAYHNE-YKALOCIXSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.67 Å
R-Value Free: 0.222 (Depositor), 0.220 (DCC)
R-Value Work: 0.191 (Depositor), 0.190 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.47	α = 90
b = 87.47	β = 90
c = 55.751	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
SCALA	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2017-08-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-08-02
Type: Initial release
Version 1.1: 2017-09-20
Changes: Database references
Version 1.2: 2019-06-12
Changes: Data collection, Structure summary
Version 1.3: 2024-05-08
Changes: Data collection, Database references, Structure summary