5MP3 | pdb_00005mp3

Crystal structure of DC8E8 Fab in the complex with a 30-mer tau peptide at pH 6.5

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 
    0.249 (Depositor), 0.241 (DCC) 
  • R-Value Work: 
    0.199 (Depositor), 0.199 (DCC) 
  • R-Value Observed: 
    0.201 (Depositor) 

Starting Model: experimental
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This is version 2.2 of the entry. See complete history. 

Literature

Crystal structure of DC8E8 Fab in the complex with a 30-mer tau peptide at pH 6.5

Skrabana, R., Novak, M.

To be published.

Macromolecule Content 

  • Total Structure Weight: 102.01 kDa 
  • Atom Count: 6,842 
  • Modeled Residue Count: 894 
  • Deposited Residue Count: 936 
  • Unique protein chains: 3

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Igh proteinA [auth H],
C [auth A]		220Mus musculusMutation(s): 0 
UniProt
Find proteins for Q99LC4 (Mus musculus)
Explore Q99LC4 
Go to UniProtKB:  Q99LC4
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UniProt GroupQ99LC4
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Reference Sequence
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|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ENSMUSG00000076577 proteinB [auth L],
D [auth B]		218Mus musculusMutation(s): 0 
UniProt
Find proteins for Q52L64 (Mus musculus)
Explore Q52L64 
Go to UniProtKB:  Q52L64
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UniProt GroupQ52L64
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Reference Sequence
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|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Microtubule-associated proteinE [auth C],
F [auth D]		30Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P10636 (Homo sapiens)
Explore P10636 
Go to UniProtKB:  P10636
PHAROS:  P10636
GTEx:  ENSG00000186868 
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UniProt GroupP10636
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
PCA
Query on PCA		A [auth H],
C [auth A]		L-PEPTIDE LINKINGC5 H7 N O3GLN

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free:  0.249 (Depositor), 0.241 (DCC) 
  • R-Value Work:  0.199 (Depositor), 0.199 (DCC) 
  • R-Value Observed: 0.201 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.85α = 90
b = 89.89β = 90.11
c = 83.6γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-02
    Type: Initial release
  • Version 1.1: 2018-11-21
    Changes: Data collection, Derived calculations
  • Version 1.2: 2019-07-10
    Changes: Data collection
  • Version 1.3: 2019-07-17
    Changes: Data collection
  • Version 2.0: 2020-03-11
    Changes: Polymer sequence
  • Version 2.1: 2024-01-17
    Changes: Data collection, Database references, Refinement description
  • Version 2.2: 2024-10-16
    Changes: Structure summary