Structural insights into collagen-binding by platelet receptor Glycoprotein VI
Feitsma, L.J., Brondijk, T.H.C., Jarvis, G., Hagemans, D., Bihan, D., Jerah, N., Versteeg, M., Farndale, R.W., Huizinga, E.G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Platelet glycoprotein VI | 181 | Homo sapiens | Mutation(s): 0 Gene Names: GP6 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9HCN6 (Homo sapiens) Explore Q9HCN6 Go to UniProtKB: Q9HCN6 | |||||
PHAROS: Q9HCN6 GTEx: ENSG00000088053 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9HCN6 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | Go to GlyGen: Q9HCN6-1 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
(GPO)3 | 21 | Homo sapiens | Mutation(s): 0 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P02452 (Homo sapiens) Explore P02452 Go to UniProtKB: P02452 | |||||
PHAROS: P02452 GTEx: ENSG00000108821 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02452 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth A], I [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
PG4 Query on PG4 | G [auth A], J [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
CL Query on CL | H [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
HYP Query on HYP | C, D, E | L-PEPTIDE LINKING | C5 H9 N O3 | PRO |
Length ( Å ) | Angle ( ˚ ) |
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a = 59.72 | α = 90 |
b = 59.72 | β = 90 |
c = 319.72 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
iMOSFLM | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Netherlands Organization for Scientific Research | Netherlands | ECHO 700.58.006 |