5UL6

The molecular mechanisms by which NS1 of the 1918 Spanish influenza A virus hijack host protein-protein interactions


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.168 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The Molecular Mechanisms Underlying the Hijack of Host Proteins by the 1918 Spanish Influenza Virus.

Shen, Q.Zeng, D.Zhao, B.Bhatt, V.S.Li, P.Cho, J.H.

(2017) ACS Chem Biol 12: 1199-1203

  • DOI: https://doi.org/10.1021/acschembio.7b00168
  • Primary Citation of Related Structures:  
    5UL6

  • PubMed Abstract: 

    The 1918 Spanish influenza A virus (IAV) caused one of the most serious pandemics in history. The nonstructural protein 1 (NS1) of the 1918 IAV hijacks the interaction between human CrkII and JNK1. Little is, however, known about its molecular mechanism. Here, we performed X-ray crystallography, NMR relaxation dispersion experiment, and fluorescence spectroscopy to determine the structural, kinetic, and thermodynamic mechanisms underlying the hijacking of CrkII by 1918 IAV NS1. We observed that the interaction between a proline-rich motif in NS1 and the N-terminal SH3 domain of CrkII displays strikingly rapid kinetics and exceptionally high affinity with 100-fold faster k on and 3300-fold lower K d compared to those for the CrkII-JNK1 interaction. These results provide molecular insight into the mechanism by which 1918 IAV NS1 hijacks CrkII and disrupts its interactions with critical cellular signaling proteins.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, Texas A&M University , College Station, Texas 77843, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Adapter molecule crk58Homo sapiensMutation(s): 0 
Gene Names: CRK
UniProt & NIH Common Fund Data Resources
Find proteins for P46108 (Homo sapiens)
Explore P46108 
Go to UniProtKB:  P46108
PHAROS:  P46108
GTEx:  ENSG00000167193 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46108
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Proline-rich motif of nonstructural protein 1 of influenza a virusB [auth M]15Influenza A virusMutation(s): 0 
UniProt
Find proteins for Q99AU3 (Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
Explore Q99AU3 
Go to UniProtKB:  Q99AU3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99AU3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.168 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 27.65α = 90
b = 39.26β = 98.43
c = 29.03γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-08-09
    Type: Initial release
  • Version 1.1: 2023-10-04
    Changes: Data collection, Database references, Refinement description