5WNH | pdb_00005wnh

X-RAY CO-STRUCTURE OF RHO-ASSOCIATED PROTEIN KINASE (ROCK1) WITH A HIGHLY SELECTIVE INHIBITOR

PDB DOI: https://doi.org/10.2210/pdb5WNH/pdb

Classification: TRANSFERASE/TRANSFERASE inhibitor
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2017-07-31 Released: 2018-08-01
Deposition Author(s): Li, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free:
0.234 (Depositor), 0.258 (DCC)
R-Value Work:
0.227 (Depositor), 0.243 (DCC)
R-Value Observed:
0.227 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5WNH

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Novel mechanism of Rho kinase selectivity: beyond the ATP pocket

Li, X., Marshall, D., Sibley, R., Bosanac, T., Ginn, J., Kugler, S., Gautschi, E., Molinaro, T., Soleymanzadeh, L., Shih, C.K., Young, E.R.R.

To be published.

Macromolecule Content

Total Structure Weight: 194 kDa
Atom Count: 12,783
Modeled Residue Count: 1,544
Deposited Residue Count: 1,660
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rho-associated protein kinase 1	A, B, C, D	415	Homo sapiens	Mutation(s): 0 Gene Names: ROCK1 EC: 2.7.11.1 (PDB Primary Data), 2.7.11.39 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q13464 (Homo sapiens) Explore Q13464 Go to UniProtKB: Q13464
PHAROS: Q13464 GTEx: ENSG00000067900
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q13464
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
B5G Query on B5G Download:Ideal Coordinates CCD File SDF format, chain H [auth D] SDF format, chain G [auth C] SDF format, chain F [auth B] SDF format, chain E [auth A] MOL2 format, chain H [auth D] MOL2 format, chain G [auth C] MOL2 format, chain F [auth B] MOL2 format, chain E [auth A] mmCIF format, chain H [auth D] mmCIF format, chain G [auth C] mmCIF format, chain F [auth B] mmCIF format, chain E [auth A]	E [auth A], F [auth B], G [auth C], H [auth D]	(2R)-N-(3-cyanophenyl)-2-{3-[(5-methyl-4,5,6,7-tetrahydro[1,3]thiazolo[5,4-c]pyridin-2-yl)carbamoyl]phenyl}pyrrolidine-1-carboxamide C₂₆ H₂₆ N₆ O₂ S WSCPCHMPNPSKDY-JOCHJYFZSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.234 (Depositor), 0.258 (DCC)
R-Value Work: 0.227 (Depositor), 0.243 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 162.923	α = 90
b = 81.975	β = 115.68
c = 167.476	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
d*TREK	data reduction
d*TREK	data scaling
PHASER	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2018-08-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-08-01
Type: Initial release
Version 1.1: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.