6JOB | pdb_00006job

Ferritin variant with "GMG" motif

PDB DOI: https://doi.org/10.2210/pdb6JOB/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-03-20 Released: 2020-03-25
Deposition Author(s): Zheng, B.W., Zhou, K., Zhang, T., Lv, C., Wang, H., Zhao, G.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.93 Å
R-Value Free:
0.368 (Depositor), 0.370 (DCC)
R-Value Work:
0.284 (Depositor), 0.291 (DCC)
R-Value Observed:
0.288 (Depositor)

Method: SOLUTION SCATTERING

wwPDB Validation 3D Report Full Report

Validation slider image for 6JOB

This is version 1.1 of the entry. See complete history.

Literature

Self-assembly of protein nanocage into designed 2D and 3D networks by grafting amyloidogenic motifs on the exterior surfaces.

Zheng, B.W., Zhou, K., Zhang, T., Lv, C., Wang, H., Zhao, G.

To be published.

Macromolecule Content

Total Structure Weight: 255.25 kDa
Atom Count: 16,956
Modeled Residue Count: 2,064
Deposited Residue Count: 2,196
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin heavy chain	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	183	Homo sapiens	Mutation(s): 0 Gene Names: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15 EC: 1.16.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for P02794 (Homo sapiens) Explore P02794 Go to UniProtKB: P02794
PHAROS: P02794 GTEx: ENSG00000167996
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02794
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.93 Å
R-Value Free: 0.368 (Depositor), 0.370 (DCC)
R-Value Work: 0.284 (Depositor), 0.291 (DCC)
R-Value Observed: 0.288 (Depositor)

Method: SOLUTION SCATTERING

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 219.17	α = 90
b = 219.17	β = 90
c = 147.95	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-03-25

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31730069

Revision History (Full details and data files)

Version 1.0: 2020-03-25
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.