6KJD

lovastatin esterase PcEST inactive mutant S57A in complex with lovastatin

PDB DOI: https://doi.org/10.2210/pdb6KJD/pdb

Classification: HYDROLASE
Organism(s): Penicillium rubens Wisconsin 54-1255
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2019-07-22 Released: 2019-12-25
Deposition Author(s): Liang, Y.J., Lu, X.F.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.210
R-Value Work: 0.168
R-Value Observed: 0.170

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into the catalytic mechanism of lovastatin hydrolase

Liang, Y.J., Lu, X.F.

(2019) J Biol Chem

DOI: https://doi.org/10.1074/jbc.RA119.011936

Macromolecule Content

Total Structure Weight: 88.37 kDa
Atom Count: 6,802
Modelled Residue Count: 800
Deposited Residue Count: 800
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pc15g00720 protein	A [auth B], B [auth A]	400	Penicillium rubens Wisconsin 54-1255	Mutation(s): 1 Gene Names: Pc15g00720, PCH_Pc15g00720 EC: 3.1.1
UniProt
Find proteins for B6H6L7 (Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255)) Explore B6H6L7 Go to UniProtKB: B6H6L7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B6H6L7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
LVA (Subject of Investigation/LOI) Query on LVA Download Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain F [auth A] MOL2 format, chain C [auth B] MOL2 format, chain F [auth A] mmCIF format, chain C [auth B] mmCIF format, chain F [auth A]	C [auth B], F [auth A]	(3R,5R)-7-((1R,2R,6S,8R,8AS)-2,6-DIMETHYL-8-{[(2R)-2-METHYLBUTANOYL]OXY}-1,2,6,7,8,8A-HEXAHYDRONAPHTHALEN-1-YL)-3,5-DIHYDROXYHEPTANOIC ACID C₂₄ H₃₈ O₆ QLJODMDSTUBWDW-BXMDZJJMSA-N		Interactions Focus chain C [auth B] Focus chain F [auth A] Interactions & Density Focus chain C [auth B] Focus chain F [auth A]
144 (Subject of Investigation/LOI) Query on 144 Download Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain E [auth B] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth A] MOL2 format, chain D [auth B] MOL2 format, chain E [auth B] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] mmCIF format, chain D [auth B] mmCIF format, chain E [auth B] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A]	D [auth B], E [auth B], G [auth A], H [auth A], I [auth A]	TRIS-HYDROXYMETHYL-METHYL-AMMONIUM C₄ H₁₂ N O₃ DRDCQJADRSJFFD-UHFFFAOYSA-N		Interactions Focus chain D [auth B] Focus chain E [auth B] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Interactions & Density Focus chain D [auth B] Focus chain E [auth B] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A]