6PAW | pdb_00006paw

Crystal structure of DAPK2 S308A Calcium/Calmodulin complex

PDB DOI: https://doi.org/10.2210/pdb6PAW/pdb

Classification: TRANSFERASE, APOPTOSIS
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2019-06-12 Released: 2020-06-17
Deposition Author(s): Simon, B., Wilmanns, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.95 Å
R-Value Free:
0.288 (Depositor), 0.286 (DCC)
R-Value Work:
0.249 (Depositor), 0.251 (DCC)
R-Value Observed:
0.251 (Depositor)

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Death-associated protein kinase 2 in complex with Calcium Calmodulin

Simon, B., Wilmanns, M.

To be published.

Macromolecule Content

Total Structure Weight: 217.27 kDa
Atom Count: 12,988
Modeled Residue Count: 1,596
Deposited Residue Count: 1,888
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Death-associated protein kinase 2	A, B, D [auth E], E [auth F]	323	Homo sapiens	Mutation(s): 3 Gene Names: DAPK2 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UIK4 (Homo sapiens) Explore Q9UIK4 Go to UniProtKB: Q9UIK4
PHAROS: Q9UIK4 GTEx: ENSG00000035664
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UIK4
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Calmodulin-1	C [auth D], F [auth G], G [auth H], H [auth C]	149	Homo sapiens	Mutation(s): 0 Gene Names: CALM1, CALM, CAM, CAM1
UniProt & NIH Common Fund Data Resources
Find proteins for P0DP23 (Homo sapiens) Explore P0DP23 Go to UniProtKB: P0DP23
PHAROS: P0DP23 GTEx: ENSG00000198668
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0DP23
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain Q [auth C] SDF format, chain P [auth C] SDF format, chain O [auth H] SDF format, chain N [auth G] SDF format, chain M [auth G] SDF format, chain L [auth D] SDF format, chain K [auth D] SDF format, chain J [auth D] SDF format, chain I [auth D] MOL2 format, chain Q [auth C] MOL2 format, chain P [auth C] MOL2 format, chain O [auth H] MOL2 format, chain N [auth G] MOL2 format, chain M [auth G] MOL2 format, chain L [auth D] MOL2 format, chain K [auth D] MOL2 format, chain J [auth D] MOL2 format, chain I [auth D] mmCIF format, chain Q [auth C] mmCIF format, chain P [auth C] mmCIF format, chain O [auth H] mmCIF format, chain N [auth G] mmCIF format, chain M [auth G] mmCIF format, chain L [auth D] mmCIF format, chain K [auth D] mmCIF format, chain J [auth D] mmCIF format, chain I [auth D]	I [auth D] J [auth D] K [auth D] L [auth D] M [auth G] I [auth D], J [auth D], K [auth D], L [auth D], M [auth G], N [auth G], O [auth H], P [auth C], Q [auth C]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain I [auth D] Focus chain J [auth D] Focus chain K [auth D] Focus chain L [auth D] Focus chain M [auth G] Focus chain N [auth G] Focus chain O [auth H] Focus chain P [auth C] Focus chain Q [auth C] Interactions & Density Focus chain I [auth D] Focus chain J [auth D] Focus chain K [auth D] Focus chain L [auth D] Focus chain M [auth G] Focus chain N [auth G] Focus chain O [auth H] Focus chain P [auth C] Focus chain Q [auth C]