Download MendeleyMaking hydrogens stand out: Enhanced neutron diffraction from biological crystals using dynamic nuclear polarization
Pierce, J., Myles, D.A.To be published.
6PGY
MTSL labelled T4 lysozyme pseudo-wild type K65C mutant
- PDB DOI: https://doi.org/10.2210/pdb6PGY/pdb
- Classification: HYDROLASE
- Organism(s): Tequatrovirus T4
- Expression System: Escherichia coli K-12
- Mutation(s): Yes
- Deposited: 2019-06-25 Released: 2020-07-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.182
- R-Value Work: 0.158
- R-Value Observed: 0.159
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endolysin | 164 | Tequatrovirus T4 | Mutation(s): 3 Gene Names: e, T4Tp126 EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for D9IEF7 (Enterobacteria phage T4) Explore D9IEF7 Go to UniProtKB: D9IEF7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D9IEF7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MTN (Subject of Investigation/LOI) Query on MTN | D [auth A] | S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate C10 H18 N O3 S2 MXZPGYFBZHBAQM-UHFFFAOYSA-N |  | ||
| HED Query on HED | E [auth A] | 2-HYDROXYETHYL DISULFIDE C4 H10 O2 S2 KYNFOMQIXZUKRK-UHFFFAOYSA-N |  | ||
| CL Query on CL | B [auth A], C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.182
- R-Value Work: 0.158
- R-Value Observed: 0.159
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.02 | α = 90 |
| b = 61.02 | β = 90 |
| c = 96.481 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2020-07-01 Deposition Author(s): Cuneo, M.J., Myles, D.A., Li, L.
Revision History (Full details and data files)
- Version 1.0: 2020-07-01
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description - Version 1.2: 2024-11-20
Changes: Structure summary
