6QHE | pdb_00006qhe

Alcohol Dehydrogenase from Arthrobacter sp. TS-15 in complex with NAD+

PDB DOI: https://doi.org/10.2210/pdb6QHE/pdb

Classification: OXIDOREDUCTASE
Organism(s): Arthrobacter
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-01-16 Released: 2019-11-27
Deposition Author(s): Lockie, C., Beloti, L., Shanati, T., Ansorge-Schumacher, M., Grogan, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.83 Å
R-Value Free:
0.182 (Depositor), 0.190 (DCC)
R-Value Work:
0.159 (Depositor), 0.171 (DCC)
R-Value Observed:
0.161 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Two Enantiocomplementary Ephedrine Dehydrogenases from Arthrobacter sp. TS-15 with Broad Substrate Specificity

Shanati, T., Lockie, C., Beloti, L., Grogan, G., Ansorge-Schumacher, M.

(2019) ACS Catal 9: 6202-6211

DOI: https://doi.org/10.1021/acscatal.9b00621

Macromolecule Content

Total Structure Weight: 175.58 kDa
Atom Count: 12,361
Modeled Residue Count: 1,555
Deposited Residue Count: 1,650
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol Dehydrogenase	A, B, C, D, E A, B, C, D, E, F	275	Arthrobacter	Mutation(s): 0 EC: 1.1.1.1

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAD Query on NAD Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain I [auth B] SDF format, chain K [auth C] SDF format, chain M [auth D] SDF format, chain O [auth F] MOL2 format, chain G [auth A] MOL2 format, chain I [auth B] MOL2 format, chain K [auth C] MOL2 format, chain M [auth D] MOL2 format, chain O [auth F] mmCIF format, chain G [auth A] mmCIF format, chain I [auth B] mmCIF format, chain K [auth C] mmCIF format, chain M [auth D] mmCIF format, chain O [auth F]	G [auth A], I [auth B], K [auth C], M [auth D], O [auth F]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₁ H₂₇ N₇ O₁₄ P₂ BAWFJGJZGIEFAR-NNYOXOHSSA-N		Interactions Focus chain G [auth A] Focus chain I [auth B] Focus chain K [auth C] Focus chain M [auth D] Focus chain O [auth F] Interactions & Density Focus chain G [auth A] Focus chain I [auth B] Focus chain K [auth C] Focus chain M [auth D] Focus chain O [auth F]
NA Query on NA Download:Ideal Coordinates CCD File SDF format, chain J [auth B] SDF format, chain N [auth E] SDF format, chain L [auth C] SDF format, chain H [auth A] MOL2 format, chain J [auth B] MOL2 format, chain N [auth E] MOL2 format, chain L [auth C] MOL2 format, chain H [auth A] mmCIF format, chain J [auth B] mmCIF format, chain N [auth E] mmCIF format, chain L [auth C] mmCIF format, chain H [auth A]	H [auth A], J [auth B], L [auth C], N [auth E]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain J [auth B] Focus chain L [auth C] Focus chain N [auth E] Interactions & Density Focus chain H [auth A] Focus chain J [auth B] Focus chain L [auth C] Focus chain N [auth E]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.83 Å
R-Value Free: 0.182 (Depositor), 0.190 (DCC)
R-Value Work: 0.159 (Depositor), 0.171 (DCC)
R-Value Observed: 0.161 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.731	α = 90
b = 119.041	β = 90
c = 348.578	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2019-11-27

Deposition Author(s):

Lockie, C.

Beloti, L.

Shanati, T.

Ansorge-Schumacher, M.

Grogan, G.

Revision History (Full details and data files)

Version 1.0: 2019-11-27
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Derived calculations, Refinement description