6R2X | pdb_00006r2x

NMR structure of Chromogranin A (F39-D63)

• PDB DOI: https://doi.org/10.2210/pdb6R2X/pdb
• BMRB: 34381

• Classification: HORMONE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-03-19 Released: 2019-12-04 
• Deposition Author(s): Nardelli, F., Quilici, G., Ghitti, M., Curnis, F., Gori, A., Berardi, A., Corti, A., Musco, G.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 30 
• Conformers Submitted: 15 
• Selection Criteria: structures with the lowest energy 

Literature

A stapled chromogranin A-derived peptide is a potent dual ligand for integrins alpha v beta 6 and alpha v beta 8.

Nardelli, F., Ghitti, M., Quilici, G., Gori, A., Luo, Q., Berardi, A., Sacchi, A., Monieri, M., Bergamaschi, G., Bermel, W., Chen, F., Corti, A., Curnis, F., Musco, G.

(2019) Chem Commun (Camb) 55: 14777-14780

• PubMed: 31755501 
• DOI: https://doi.org/10.1039/c9cc08518a
• Primary Citation Related Structures: 
  6R2X


• PubMed Abstract: 
  

  Combining 2D STD-NMR, computation, biochemical assays and click-chemistry, we have identified a chromogranin-A derived compound (5) that has high affinity and bi-selectivity for αvβ6 and αvβ8 integrins and is stable in microsomal preparations. 5 is suitable for nanoparticle functionalization and delivery to cancer cells, holding promise for diagnostic and/or therapeutic applications.

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Organizational Affiliation: 
• IRCCS San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy. [e-mail] [e-mail] [e-mail] [e-mail].
Istituto di Chimica del Riconoscimento Molecolare, C.N.R., Via Mario Bianco 9, 20131 Milan, Italy.
Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, 639 Zhizaoju Road, Shanghai, 200011, China.
Bruker BioSpin GmbH, Silberstreifen 4, Rheinstetten, 76287, Germany.
IRCCS San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy. [e-mail] [e-mail] [e-mail] [e-mail] and Vita Salute San Raffaele University, Via Olgettina 58, 20132 Milan, Italy.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 3.04 kDa 
• Atom Count: 214 
• Modeled Residue Count: 25 
• Deposited Residue Count: 25 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chromogranin-A	A	25	Homo sapiens	Mutation(s): 0  Gene Names: CHGA
UniProt & NIH Common Fund Data Resources
Find proteins for P10645 (Homo sapiens) Explore P10645  Go to UniProtKB:  P10645
PHAROS:  P10645 GTEx:  ENSG00000100604

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 30 
• Conformers Submitted: 15 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-12-04 
Deposition Author(s): Nardelli, F., Quilici, G., Ghitti, M., Curnis, F., Gori, A., Berardi, A., Corti, A., Musco, G.

Revision History  

• Version 1.0: 2019-12-04
  Type: Initial release
  
• Version 1.1: 2019-12-18
  Changes: Database references
• Version 1.2: 2023-06-14
  Changes: Database references, Other
• Version 1.3: 2024-06-19
  Changes: Data collection, Database references