6RVW

Structure of right-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

An ultra-stable gold-coordinated protein cage displaying reversible assembly.

Malay, A.D.Miyazaki, N.Biela, A.Chakraborti, S.Majsterkiewicz, K.Stupka, I.Kaplan, C.S.Kowalczyk, A.Piette, B.M.A.G.Hochberg, G.K.A.Wu, D.Wrobel, T.P.Fineberg, A.Kushwah, M.S.Kelemen, M.Vavpetic, P.Pelicon, P.Kukura, P.Benesch, J.L.P.Iwasaki, K.Heddle, J.G.

(2019) Nature 569: 438-442

  • DOI: https://doi.org/10.1038/s41586-019-1185-4
  • Primary Citation of Related Structures:  
    6RVV, 6RVW

  • PubMed Abstract: 

    Symmetrical protein cages have evolved to fulfil diverse roles in nature, including compartmentalization and cargo delivery 1 , and have inspired synthetic biologists to create novel protein assemblies via the precise manipulation of protein-protein interfaces. Despite the impressive array of protein cages produced in the laboratory, the design of inducible assemblies remains challenging 2,3 . Here we demonstrate an ultra-stable artificial protein cage, the assembly and disassembly of which can be controlled by metal coordination at the protein-protein interfaces. The addition of a gold (I)-triphenylphosphine compound to a cysteine-substituted, 11-mer protein ring triggers supramolecular self-assembly, which generates monodisperse cage structures with masses greater than 2 MDa. The geometry of these structures is based on the Archimedean snub cube and is, to our knowledge, unprecedented. Cryo-electron microscopy confirms that the assemblies are held together by 120 S-Au i -S staples between the protein oligomers, and exist in two chiral forms. The cage shows extreme chemical and thermal stability, yet it readily disassembles upon exposure to reducing agents. As well as gold, mercury(II) is also found to enable formation of the protein cage. This work establishes an approach for linking protein components into robust, higher-order structures, and expands the design space available for supramolecular assemblies to include previously unexplored geometries.


  • Organizational Affiliation

    Heddle Initiative Research Unit, RIKEN, Saitama, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription attenuation protein MtrB74Geobacillus stearothermophilusMutation(s): 2 
Gene Names: mtrB
UniProt
Find proteins for Q9X6J6 (Geobacillus stearothermophilus)
Explore Q9X6J6 
Go to UniProtKB:  Q9X6J6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9X6J6
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AU (Subject of Investigation/LOI)
Query on AU

Download Ideal Coordinates CCD File 
AK [auth CC]
AL [auth FG]
AM [auth JC]
AN [auth PC]
BK [auth CD]
GOLD ION
Au
ZBKIUFWVEIBQRT-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Polish National Science CentrePolandNCN 2016/20/W/NZ1/00095
Other governmentPolandFNP Homing/2016-2/20
Japan Society for the Promotion of ScienceJapanNo. 2556023
Other governmentPolandMRPO.05.01.00-12-013/15
Japan Agency for Medical Research and Development (AMED)Japan--

Revision History  (Full details and data files)

  • Version 1.0: 2019-06-12
    Type: Initial release
  • Version 1.1: 2024-05-15
    Changes: Data collection, Database references, Derived calculations, Refinement description