6WPK | pdb_00006wpk

SARM1 Autoinhibited Conformation

PDB DOI: https://doi.org/10.2210/pdb6WPK/pdb
EM Map EMD-21863: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2020-04-27 Released: 2020-08-12
Deposition Author(s): Xie, T., Bratkowski, M., Bai, X., Sambashivan, S.
Funding Organization(s): Cancer Prevention and Research Institute of Texas (CPRIT), Welch Foundation, National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 6WPK

This is version 1.1 of the entry. See complete history.

Literature

Structural and Mechanistic Regulation of the Prodegenerative NAD Hydrolase SARM1

Bratkowski, M., Xie, T., Thayer, D.A., Lad, S., Mathur, P., Yang, Y.S., Burdett, T.C., Danao, J., Cantor, A., Kozak, J.A., Brown, S.P., Bai, X., Sambashivan, S.

(2020) Cell Rep 32: 107999-107999

DOI: https://doi.org/10.1016/j.celrep.2020.107999

Macromolecule Content

Total Structure Weight: 605.44 kDa
Atom Count: 33,229
Modeled Residue Count: 4,376
Deposited Residue Count: 5,488
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NAD(+) hydrolase SARM1	A, B, C, D, E A, B, C, D, E, F, G, H	686	Homo sapiens	Mutation(s): 0 Gene Names: SARM1, KIAA0524, SAMD2, SARM EC: 3.2.2.6 (PDB Primary Data), 3.2.2 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q6SZW1 (Homo sapiens) Explore Q6SZW1 Go to UniProtKB: Q6SZW1
PHAROS: Q6SZW1 GTEx: ENSG00000004139
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6SZW1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-08-12

Deposition Author(s):

Sambashivan, S.

Funding Organization	Location	Grant Number
Cancer Prevention and Research Institute of Texas (CPRIT)	United States	RR160082
Welch Foundation	United States	I-1944-20180324
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R01136976

Revision History (Full details and data files)

Version 1.0: 2020-08-12
Type: Initial release
Version 1.1: 2024-03-06
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.