6XSN

Crystal structure of NHP VD20.5A4 Fab in complex with 16055 V1V2 1FD6 scaffold

  • Classification: IMMUNE SYSTEM
  • Organism(s): Macaca mulatta
  • Mutation(s): No 

  • Deposited: 2020-07-15 Released: 2021-07-21 
  • Deposition Author(s): Aljedani, S., Pancera, M.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.87 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.223 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for potent tier 2 autologous neutralization elicited by vaccination

Aljedani, S.Liban, T.Tran, K.Phad, G.Singh, S.Dubrovskaya, V.Pushparaj, P.Martinez-Murillo, P.Rodarte, J.Kinzelman, R.Lee, K.Shapiro, L.Hedestam, G.Wyatt, R.Pancera, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
VD20.5A4_heavy_chainA [auth H]224Macaca mulattaMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
VD20.5A4_light_chainB [auth L]214Macaca mulattaMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
16055_V1V2-1FD6C141Macaca mulattaMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.87 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.223 
  • Space Group: P 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 106.565α = 90
b = 106.565β = 90
c = 128.926γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Cootmodel building
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP01 AI104722

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-21
    Type: Initial release