6Z5U

Cryo-EM structure of the A. baumannii MlaBDEF complex bound to APPNHP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.1 of the entry. See complete history


Literature

Structure and lipid dynamics in the maintenance of lipid asymmetry inner membrane complex of A. baumannii.

Mann, D.Fan, J.Somboon, K.Farrell, D.P.Muenks, A.Tzokov, S.B.DiMaio, F.Khalid, S.Miller, S.I.Bergeron, J.R.C.

(2021) Commun Biol 4: 817-817

  • DOI: https://doi.org/10.1038/s42003-021-02318-4
  • Primary Citation of Related Structures:  
    6Z5U

  • PubMed Abstract: 

    Multi-resistant bacteria are a major threat in modern medicine. The gram-negative coccobacillus Acinetobacter baumannii currently leads the WHO list of pathogens in critical need for new therapeutic development. The maintenance of lipid asymmetry (MLA) protein complex is one of the core machineries that transport lipids from/to the outer membrane in gram-negative bacteria. It also contributes to broad-range antibiotic resistance in several pathogens, most prominently in A. baumannii. Nonetheless, the molecular details of its role in lipid transport has remained largely elusive. Here, we report the cryo-EM maps of the core MLA complex, MlaBDEF, from the pathogen A. baumannii, in the apo-, ATP- and ADP-bound states, revealing multiple lipid binding sites in the cytosolic and periplasmic side of the complex. Molecular dynamics simulations suggest their potential trajectory across the membrane. Collectively with the recently-reported structures of the E. coli orthologue, this data also allows us to propose a molecular mechanism of lipid transport by the MLA system.


  • Organizational Affiliation

    Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter permease
A, B
258Acinetobacter baumanniiMutation(s): 0 
Gene Names: 
Membrane Entity: Yes 
UniProt
Find proteins for V5V9F4 (Acinetobacter baumannii)
Explore V5V9F4 
Go to UniProtKB:  V5V9F4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupV5V9F4
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Anti-sigma factor antagonist
C, D
95Acinetobacter baumanniiMutation(s): 0 
Gene Names: 
UniProt
Find proteins for V5V9K5 (Acinetobacter baumannii)
Explore V5V9K5 
Go to UniProtKB:  V5V9K5
Entity Groups  
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UniProt GroupV5V9K5
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
MCE family protein226Acinetobacter baumanniiMutation(s): 0 
Gene Names: 
Membrane Entity: Yes 
UniProt
Find proteins for V5V921 (Acinetobacter baumannii)
Explore V5V921 
Go to UniProtKB:  V5V921
Entity Groups  
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UniProt GroupV5V921
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter ATP-binding proteinJ [auth K],
K [auth L]
276Acinetobacter baumanniiMutation(s): 0 
Gene Names: ttg2ANU60_03710
UniProt
Find proteins for A0A4P2WWN2 (Acinetobacter baumannii)
Explore A0A4P2WWN2 
Go to UniProtKB:  A0A4P2WWN2
Entity Groups  
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UniProt GroupA0A4P2WWN2
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/R019061/1

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-05
    Type: Initial release
  • Version 1.1: 2021-07-14
    Changes: Database references