Red alga C.merolae Photosystem I
Nelson, N., Klaiman, D., Hippler, M.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Similar to light harvesting protein | A [auth 1] | 173 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for M1VKK5 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore M1VKK5 Go to UniProtKB: M1VKK5 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | M1VKK5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Similar to chlorophyll a/b-binding protein, CP24 | B [auth 2] | 179 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for M1UU36 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore M1UU36 Go to UniProtKB: M1UU36 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | M1UU36 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lhcr3 | C [auth 3] | 174 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A1 | D [auth A] | 743 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85FY7 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85FY7 Go to UniProtKB: Q85FY7 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85FY7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A2 | E [auth B] | 731 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85FY6 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85FY6 Go to UniProtKB: Q85FY6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85FY6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I iron-sulfur center | F [auth C] | 80 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85G47 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85G47 Go to UniProtKB: Q85G47 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85G47 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I p700 chlorophyll A apoprotein A2 | G [auth D] | 138 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for Q85FY0 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85FY0 Go to UniProtKB: Q85FY0 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85FY0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I iron-sulfur center subunit VII | H [auth E] | 61 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85FZ1 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85FZ1 Go to UniProtKB: Q85FZ1 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85FZ1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PSI-F | I [auth F] | 155 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85FS9 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85FS9 Go to UniProtKB: Q85FS9 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85FS9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VIII | J [auth I] | 31 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85FQ6 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85FQ6 Go to UniProtKB: Q85FQ6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85FQ6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IX | K [auth J] | 38 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85FS8 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85FS8 Go to UniProtKB: Q85FS8 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85FS8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PSI-K | L [auth K] | 54 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85G51 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85G51 Go to UniProtKB: Q85G51 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85G51 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XI | M [auth L] | 136 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85FP8 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85FP8 Go to UniProtKB: Q85FP8 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85FP8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XII | N [auth M] | 27 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for Q85G73 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore Q85G73 Go to UniProtKB: Q85G73 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q85G73 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PsaO | 97 | Cyanidioschyzon merolae strain 10D | Mutation(s): 0 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for M1VFJ4 (Cyanidioschyzon merolae (strain NIES-3377 / 10D)) Explore M1VFJ4 Go to UniProtKB: M1VFJ4 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | M1VFJ4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 17 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | AG [auth B], WF [auth B], ZF [auth B] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CL0 Query on CL0 | YB [auth A] | CHLOROPHYLL A ISOMER C55 H72 Mg N4 O5 VIQFHHZSLDFWDU-DVXFRRMCSA-M | |||
CLA Query on CLA | AC [auth A] AD [auth A] AE [auth A] AF [auth B] AH [auth L] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
T7X Query on T7X | WD [auth A] | Phosphatidylinositol C47 H83 O13 P KRTOMQDUKGRFDJ-TWUHCGEESA-N | |||
PGT Query on PGT | YF [auth B], ZA [auth 2] | (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE C40 H79 O10 P KBPVYRBBONZJHF-AMAPPZPBSA-N | |||
PTY Query on PTY | HH [auth L], WB [auth 3], XB [auth 3], XD [auth A] | PHOSPHATIDYLETHANOLAMINE C40 H80 N O8 P NJGIRBISCGPRPF-KXQOOQHDSA-N | |||
LHG Query on LHG | BG [auth B] CB [auth 2] FA [auth 1] MD [auth A] ND [auth A] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
3PH Query on 3PH | EG [auth B], UD [auth A], VG [auth J] | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE C39 H77 O8 P YFWHNAWEOZTIPI-DIPNUNPCSA-N | |||
DGA Query on DGA | AB [auth 2], RG [auth J] | DIACYL GLYCEROL C39 H76 O5 UHUSDOQQWJGJQS-QNGWXLTQSA-N | |||
C7Z Query on C7Z | AA [auth 1] CA [auth 1] DA [auth 1] DB [auth 3] EA [auth 1] | (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol C40 H56 O2 JKQXZKUSFCKOGQ-ANDPMPNWSA-N | |||
RRX Query on RRX | BA [auth 1], SD [auth A], TG [auth J], WA [auth 2], YG [auth K] | (3R)-beta,beta-caroten-3-ol C40 H56 O DMASLKHVQRHNES-FKKUPVFPSA-N | |||
BCR Query on BCR | BH [auth L] CE [auth A] FG [auth B] FH [auth L] GH [auth L] | BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N | |||
LMU Query on LMU | EB [auth 3], YD [auth A] | DODECYL-ALPHA-D-MALTOSIDE C24 H46 O11 NLEBIOOXCVAHBD-YHBSTRCHSA-N | |||
PQN Query on PQN | LD [auth A], PF [auth B] | PHYLLOQUINONE C31 H46 O2 MBWXNTAXLNYFJB-NKFFZRIASA-N | |||
ERG Query on ERG | BB [auth 2], GA [auth 1], YA [auth 2] | ERGOSTEROL C28 H44 O DNVPQKQSNYMLRS-APGDWVJJSA-N | |||
SF4 Query on SF4 | GG [auth C], HG [auth C], TD [auth A] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
CA Query on CA | CG [auth B], DG [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.19-4092-000 |
RECONSTRUCTION | RELION | 3.1.0 |
Funding Organization | Location | Grant Number |
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Israel Science Foundation | Israel | 569/17 |