7DIS

Structure of the PfGrx1 with platinum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.161 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Interaction of metals with PfGrx1

Manickam, Y.Sharma, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
GlutaredoxinA111Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: PF3D7_0306300
EC: 1.8.4.2
UniProt
Find proteins for Q9NLB2 (Plasmodium falciparum (isolate 3D7))
Explore Q9NLB2 
Go to UniProtKB:  Q9NLB2
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MPO (Subject of Investigation/LOI)
Query on MPO

Download Ideal Coordinates CCD File 
B [auth A]3[N-MORPHOLINO]PROPANE SULFONIC ACID
C7 H15 N O4 S
DVLFYONBTKHTER-UHFFFAOYSA-N
 Ligand Interaction
PT
Query on PT

Download Ideal Coordinates CCD File 
D [auth A], E [auth A]PLATINUM (II) ION
Pt
HRGDZIGMBDGFTC-UHFFFAOYSA-N
 Ligand Interaction
MPD (Subject of Investigation/LOI)
Query on MPD

Download Ideal Coordinates CCD File 
C [auth A](4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.161 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.492α = 90
b = 48.492β = 90
c = 82.69γ = 120
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
Auto-Rickshawphasing
SHELXDEphasing
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Biotechnology (DBT, India)India--

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-24
    Type: Initial release