7JNT | pdb_00007jnt

CRYSTAL STRUCTURE OF RHO-ASSOCIATED PROTEIN KINASE 2 (ROCK2) IN COMPLEX WITH A POTENT AND SELECTIVE DUAL ROCK INHIBITOR

PDB DOI: https://doi.org/10.2210/pdb7JNT/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2020-08-05 Released: 2020-09-02
Deposition Author(s): Muckelbauer, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free:
0.249 (Depositor), 0.272 (DCC)
R-Value Work:
0.211 (Depositor)
R-Value Observed:
0.211 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Identification of 5H-chromeno[3,4-c]pyridine and 6H-isochromeno[3,4-c]pyridine derivatives as potent and selective dual ROCK inhibitors.

Hu, Z., Wang, C., Sitkoff, D., Cheadle, N.L., Xu, S., Muckelbauer, J.K., Adam, L.P., Wexler, R.R., Quan, M.L.

(2020) Bioorg Med Chem Lett 30: 127474-127474

PubMed: 32805407 Search on PubMed
DOI: https://doi.org/10.1016/j.bmcl.2020.127474
Primary Citation Related Structures:
7JNT

PubMed Abstract:
A novel series of 5H-chromeno[3,4-c]pyridine, 6H-isochromeno[3,4-c]pyridine and 6H-isochromeno[4,3-d]pyrimidine derivatives as dual ROCK1 and ROCK2 inhibitors is described. Optimization led to compounds with sub-nanomolar inhibitory affinity for both kinases and excellent kinome selectivity. Compound 19 exhibited ROCK1 and ROCK2 IC ₅₀ of 0.67 nM and 0.18 nM respectively.

Organizational Affiliation

Research & Early Development, Bristol Myers Squibb, P.O. Box 5400, Princeton, NJ 08543-5400, USA. Electronic address: zilun.hu@bms.com.

Macromolecule Content

Total Structure Weight: 369.66 kDa
Atom Count: 24,387
Modeled Residue Count: 3,042
Deposited Residue Count: 3,192
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rho-associated protein kinase 2	A, B, C, D, E A, B, C, D, E, F, G, H	399	Homo sapiens	Mutation(s): 0 Gene Names: ROCK2, KIAA0619 EC: 2.7.11.1 (PDB Primary Data), 2.7.11.39 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for O75116 (Homo sapiens) Explore O75116 Go to UniProtKB: O75116
PHAROS: O75116 GTEx: ENSG00000134318
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O75116
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
VFA (Subject of Investigation/LOI) Query on VFA Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain K [auth B] SDF format, chain M [auth C] SDF format, chain O [auth D] SDF format, chain Q [auth E] SDF format, chain S [auth F] SDF format, chain V [auth G] SDF format, chain X [auth H] MOL2 format, chain I [auth A] MOL2 format, chain K [auth B] MOL2 format, chain M [auth C] MOL2 format, chain O [auth D] MOL2 format, chain Q [auth E] MOL2 format, chain S [auth F] MOL2 format, chain V [auth G] MOL2 format, chain X [auth H] mmCIF format, chain I [auth A] mmCIF format, chain K [auth B] mmCIF format, chain M [auth C] mmCIF format, chain O [auth D] mmCIF format, chain Q [auth E] mmCIF format, chain S [auth F] mmCIF format, chain V [auth G] mmCIF format, chain X [auth H]	I [auth A] K [auth B] M [auth C] O [auth D] Q [auth E] I [auth A], K [auth B], M [auth C], O [auth D], Q [auth E], S [auth F], V [auth G], X [auth H]	N-[(3-methoxyphenyl)methyl]-5H-[1]benzopyrano[3,4-c]pyridine-8-carboxamide C₂₁ H₁₈ N₂ O₃ SIKMVWPMDNIKAY-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain K [auth B] Focus chain M [auth C] Focus chain O [auth D] Focus chain Q [auth E] Focus chain S [auth F] Focus chain V [auth G] Focus chain X [auth H] Interactions & Density Focus chain I [auth A] Focus chain K [auth B] Focus chain M [auth C] Focus chain O [auth D] Focus chain Q [auth E] Focus chain S [auth F] Focus chain V [auth G] Focus chain X [auth H]
MES Query on MES Download:Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain P [auth D] SDF format, chain R [auth E] SDF format, chain U [auth F] SDF format, chain W [auth G] SDF format, chain Y [auth H] MOL2 format, chain J [auth A] MOL2 format, chain P [auth D] MOL2 format, chain R [auth E] MOL2 format, chain U [auth F] MOL2 format, chain W [auth G] MOL2 format, chain Y [auth H] mmCIF format, chain J [auth A] mmCIF format, chain P [auth D] mmCIF format, chain R [auth E] mmCIF format, chain U [auth F] mmCIF format, chain W [auth G] mmCIF format, chain Y [auth H]	J [auth A] P [auth D] R [auth E] U [auth F] W [auth G] J [auth A], P [auth D], R [auth E], U [auth F], W [auth G], Y [auth H]	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C₆ H₁₃ N O₄ S SXGZJKUKBWWHRA-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Focus chain P [auth D] Focus chain R [auth E] Focus chain U [auth F] Focus chain W [auth G] Focus chain Y [auth H] Interactions & Density Focus chain J [auth A] Focus chain P [auth D] Focus chain R [auth E] Focus chain U [auth F] Focus chain W [auth G] Focus chain Y [auth H]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain N [auth C] SDF format, chain T [auth F] MOL2 format, chain L [auth B] MOL2 format, chain N [auth C] MOL2 format, chain T [auth F] mmCIF format, chain L [auth B] mmCIF format, chain N [auth C] mmCIF format, chain T [auth F]	L [auth B], N [auth C], T [auth F]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain L [auth B] Focus chain N [auth C] Focus chain T [auth F] Interactions & Density Focus chain L [auth B] Focus chain N [auth C] Focus chain T [auth F]