7K3W

Apoferritin structure at 1.36 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.36 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Resolving individual atoms of protein complex by cryo-electron microscopy.

Zhang, K.Pintilie, G.D.Li, S.Schmid, M.F.Chiu, W.

(2020) Cell Res 30: 1136-1139


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferritin heavy chain
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
172Homo sapiensMutation(s): 0 
Gene Names: FTH1FTHFTHL6OK/SW-cl.84PIG15
EC: 1.16.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for P02794 (Homo sapiens)
Explore P02794 
Go to UniProtKB:  P02794
PHAROS:  P02794
GTEx:  ENSG00000167996 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02794
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AA [auth A]
AB [auth B]
AC [auth D]
AD [auth E]
AE [auth G]
AA [auth A],
AB [auth B],
AC [auth D],
AD [auth E],
AE [auth G],
AF [auth H],
AG [auth J],
AH [auth K],
AK [auth Q],
AL [auth R],
AM [auth T],
AN [auth V],
BA [auth A],
BC [auth D],
BD [auth E],
BF [auth H],
BG [auth J],
BH [auth L],
BI [auth M],
BJ [auth O],
BK [auth Q],
BL [auth R],
BO [auth W],
CA [auth A],
CB [auth B],
CC [auth D],
CE [auth G],
CG [auth J],
CH [auth L],
CI [auth M],
CJ [auth O],
CL [auth R],
CN [auth V],
CO [auth X],
DA [auth A],
DB [auth B],
DC [auth D],
DD [auth E],
DE [auth G],
DG [auth J],
DH [auth L],
DJ [auth O],
DK [auth Q],
DL [auth R],
DN [auth V],
DO [auth X],
EA [auth A],
EC [auth D],
ED [auth E],
EE [auth G],
EF [auth H],
EG [auth J],
EH [auth L],
EI [auth M],
EK [auth Q],
EM [auth T],
EN [auth V],
EO [auth X],
FC [auth D],
FE [auth G],
FF [auth H],
FG [auth J],
FH [auth L],
FJ [auth O],
FK [auth Q],
FL [auth R],
FM [auth T],
GB [auth B],
GC [auth D],
GF [auth I],
GG [auth J],
GH [auth L],
GJ [auth O],
GK [auth Q],
GL [auth S],
GM [auth T],
HA [auth A],
HB [auth B],
HD [auth E],
HE [auth G],
HF [auth I],
HG [auth J],
HI [auth M],
HL [auth S],
HM [auth T],
IA [auth A],
IB [auth C],
ID [auth E],
IE [auth G],
IF [auth I],
IG [auth J],
IJ [auth O],
IL [auth S],
IN [auth V],
IO [auth X],
JB [auth C],
JC [auth D],
JF [auth I],
JH [auth L],
JM [auth T],
JN [auth V],
JO [auth X],
KA [auth A],
KB [auth C],
KC [auth D],
KE [auth G],
KF [auth I],
KG [auth J],
KH [auth L],
KK [auth Q],
KM [auth U],
KN [auth V],
KO [auth X],
LA [auth A],
LB [auth C],
LF [auth I],
LG [auth K],
LI [auth N],
LJ [auth O],
LK [auth Q],
LM [auth U],
LN [auth V],
LO [auth X],
MB [auth C],
MC [auth D],
MD [auth F],
MG [auth K],
MH [auth L],
MI [auth N],
MJ [auth P],
MK [auth Q],
ML [auth S],
MM [auth U],
MO [auth X],
NB [auth C],
NC [auth D],
ND [auth F],
NE [auth G],
NG [auth K],
NH [auth L],
NI [auth N],
NJ [auth P],
NK [auth Q],
NL [auth S],
NN [auth V],
NO [auth X],
OA [auth A],
OB [auth C],
OD [auth F],
OE [auth H],
OF [auth I],
OI [auth N],
OJ [auth P],
OL [auth S],
ON [auth W],
PA [auth A],
PD [auth F],
PE [auth H],
PF [auth I],
PG [auth K],
PI [auth N],
PK [auth Q],
PL [auth S],
PN [auth W],
PO [auth X],
QA [auth B],
QC [auth D],
QD [auth F],
QE [auth H],
QG [auth K],
QH [auth L],
QI [auth N],
QK [auth R],
QL [auth S],
QM [auth U],
QN [auth W],
RA [auth B],
RB [auth C],
RC [auth D],
RD [auth F],
RE [auth H],
RF [auth I],
RG [auth K],
RH [auth L],
RI [auth N],
RK [auth R],
RL [auth S],
RM [auth U],
SA [auth B],
SB [auth C],
SC [auth E],
SD [auth F],
SE [auth H],
SF [auth I],
SG [auth K],
SH [auth M],
SI [auth N],
SJ [auth P],
SK [auth R],
SM [auth U],
TA [auth B],
TC [auth E],
TD [auth F],
TE [auth H],
TH [auth M],
TI [auth N],
TJ [auth P],
TL [auth S],
TM [auth U],
UA [auth B],
UB [auth C],
UC [auth E],
UD [auth F],
UE [auth H],
UG [auth K],
UH [auth M],
UJ [auth P],
UK [auth R],
UL [auth T],
UM [auth U],
UN [auth W],
VA [auth B],
VB [auth C],
VC [auth E],
VD [auth F],
VF [auth I],
VG [auth K],
VI [auth N],
VJ [auth P],
VK [auth R],
VL [auth T],
VM [auth U],
VN [auth W],
WA [auth B],
WC [auth E],
WF [auth I],
WH [auth M],
WI [auth O],
WJ [auth P],
WK [auth R],
WN [auth W],
XC [auth E],
XD [auth F],
XE [auth H],
XG [auth K],
XH [auth M],
XI [auth O],
XJ [auth P],
XL [auth T],
XM [auth U],
XN [auth W],
Y [auth A],
YB [auth C],
YD [auth G],
YE [auth H],
YH [auth M],
YI [auth O],
YL [auth T],
YM [auth V],
YN [auth W],
Z [auth A],
ZA [auth B],
ZB [auth C],
ZD [auth G],
ZH [auth M],
ZI [auth O],
ZJ [auth P],
ZL [auth T],
ZM [auth V],
ZN [auth W]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
AI [auth M]
AJ [auth O]
AO [auth W]
BB [auth B]
BE [auth G]
AI [auth M],
AJ [auth O],
AO [auth W],
BB [auth B],
BE [auth G],
BM [auth T],
BN [auth V],
CD [auth E],
CF [auth H],
CK [auth Q],
CM [auth T],
DF [auth H],
DI [auth M],
DM [auth T],
EB [auth B],
EJ [auth O],
EL [auth R],
FA [auth A],
FB [auth B],
FD [auth E],
FI [auth M],
FN [auth V],
FO [auth X],
GA [auth A],
GD [auth E],
GE [auth G],
GI [auth M],
GN [auth V],
GO [auth X],
HC [auth D],
HH [auth L],
HJ [auth O],
HK [auth Q],
HN [auth V],
HO [auth X],
IC [auth D],
IH [auth L],
II [auth N],
IK [auth Q],
IM [auth T],
JA [auth A],
JD [auth F],
JE [auth G],
JG [auth J],
JI [auth N],
JJ [auth O],
JK [auth Q],
JL [auth S],
KD [auth F],
KI [auth N],
KJ [auth O],
KL [auth S],
LC [auth D],
LD [auth F],
LE [auth G],
LH [auth L],
LL [auth S],
MA [auth A],
ME [auth G],
MF [auth I],
MN [auth V],
NA [auth A],
NF [auth I],
NM [auth U],
OC [auth D],
OG [auth K],
OH [auth L],
OK [auth Q],
OM [auth U],
OO [auth X],
PB [auth C],
PC [auth D],
PH [auth L],
PJ [auth P],
PM [auth U],
QB [auth C],
QF [auth I],
QJ [auth P],
RJ [auth P],
RN [auth W],
SL [auth S],
SN [auth W],
TB [auth C],
TF [auth I],
TG [auth K],
TK [auth R],
TN [auth W],
UF [auth I],
UI [auth N],
VE [auth H],
VH [auth M],
WB [auth C],
WD [auth F],
WE [auth H],
WG [auth K],
WL [auth T],
WM [auth U],
XA [auth B],
XB [auth C],
XF [auth J],
XK [auth R],
YA [auth B],
YC [auth E],
YF [auth J],
YG [auth K],
YJ [auth P],
YK [auth R],
ZC [auth E],
ZE [auth H],
ZF [auth J],
ZG [auth K],
ZK [auth R]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.36 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24GM129564
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM079429
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP41GM103832

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-18
    Type: Initial release
  • Version 1.1: 2020-12-16
    Changes: Refinement description
  • Version 1.2: 2020-12-23
    Changes: Database references
  • Version 1.3: 2024-03-06
    Changes: Data collection, Database references, Refinement description