7MUA

Structure of the adeno-associated virus 9 capsid at pH pH 5.5 in complex with terminal galactose


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

AAV9 Structural Rearrangements Induced by Endosomal Trafficking pH and Glycan Attachment

Penzes, J.J.Chipman, P.Bhattacharya, N.Zeher, A.Huang, R.McKenna, R.Agbandje-McKenna, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Capsid protein VP1518Adeno-associated virus 9Mutation(s): 0 
Gene Names: cap
UniProt
Find proteins for Q6JC40 (Adeno-associated virus 9)
Explore Q6JC40 
Go to UniProtKB:  Q6JC40
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GAL
Query on GAL

Download Ideal Coordinates CCD File 
AC [auth S] , AD [auth m] , BC [auth T] , BD [auth n] , CC [auth U] , CD [auth o] , DC [auth V] , DD [auth p] , 
AC [auth S],  AD [auth m],  BC [auth T],  BD [auth n],  CC [auth U],  CD [auth o],  DC [auth V],  DD [auth p],  EC [auth W],  ED [auth q],  FC [auth X],  FD [auth r],  GC [auth Y],  GD [auth s],  HC [auth Z],  HD [auth t],  IB [auth A],  IC [auth 1],  ID [auth u],  JB [auth B],  JC [auth 2],  JD [auth v],  KB [auth C],  KC [auth 3],  KD [auth w],  LB [auth D],  LC [auth 4],  LD [auth x],  MB [auth E],  MC [auth 5],  MD [auth y],  NB [auth F],  NC [auth 6],  ND [auth z],  OB [auth G],  OC [auth a],  OD [auth 7],  PB [auth H],  PC [auth b],  PD [auth 8],  QB [auth I],  QC [auth c],  RB [auth J],  RC [auth d],  SB [auth K],  SC [auth e],  TB [auth L],  TC [auth f],  UB [auth M],  UC [auth g],  VB [auth N],  VC [auth h],  WB [auth O],  WC [auth i],  XB [auth P],  XC [auth j],  YB [auth Q],  YC [auth k],  ZB [auth R],  ZC [auth l]
beta-D-galactopyranose
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM109524
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM082946
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesS10 OD018142
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesS10 RR025080
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24 GM116788

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-09
    Type: Initial release