7QBJ

bacterial IMPDH chimera


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Insight into the role of the Bateman domain at the molecular and physiological levels through engineered IMP dehydrogenases.

Gedeon, A.Ayoub, N.Brule, S.Raynal, B.Karimova, G.Gelin, M.Mechaly, A.Haouz, A.Labesse, G.Munier-Lehmann, H.

(2023) Protein Sci 32: e4703-e4703

  • DOI: https://doi.org/10.1002/pro.4703
  • Primary Citation of Related Structures:  
    7QBJ, 7QDX, 7QEM

  • PubMed Abstract: 

    Inosine 5'-monophosphate (IMP) dehydrogenase (IMPDH) is an ubiquitous enzyme that catalyzes the NAD + -dependent oxidation of inosine 5'-monophosphate into xanthosine 5'-monophosphate. This enzyme is formed of two distinct domains, a core domain where the catalytic reaction occurs, and a less-conserved Bateman domain. Our previous studies gave rise to the classification of bacterial IMPDHs into two classes, according to their oligomeric and kinetic properties. MgATP is a common effector but cause to different effects when it binds within the Bateman domain: it is either an allosteric activator for Class I IMPDHs or a modulator of the oligomeric state for Class II IMPDHs. To get insight into the role of the Bateman domain in the dissimilar properties of the two classes, deleted variants of the Bateman domain and chimeras issued from the interchange of the Bateman domain between the three selected IMPDHs have been generated and characterized using an integrative structural biology approach. Biochemical, biophysical, structural, and physiological studies of these variants unveil the Bateman domain as being the carrier of the molecular behaviors of both classes.


  • Organizational Affiliation

    Institut Pasteur, Université Paris Cité, Unité de Chimie et Biocatalyse, CNRS UMR3523, Paris, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Inosine-5'-monophosphate dehydrogenase
A, B, C, D
507Escherichia coliPseudomonas aeruginosa PAO1Mutation(s): 0 
Gene Names: guaBguaRb2508JW5401PA3770
EC: 1.1.1.205
UniProt
Find proteins for P0ADG7 (Escherichia coli (strain K12))
Explore P0ADG7 
Go to UniProtKB:  P0ADG7
Find proteins for Q9HXM5 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore Q9HXM5 
Go to UniProtKB:  Q9HXM5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ9HXM5P0ADG7
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.197 
  • Space Group: P 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 145.041α = 90
b = 145.041β = 90
c = 120.099γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Pasteur InstituteFrance--
Centre National de la Recherche Scientifique (CNRS)France--
French Infrastructure for Integrated Structural Biology (FRISBI)FranceANR-10-INBS-0005
Institut National de la Sante et de la Recherche Medicale (INSERM)France--

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-31
    Type: Initial release
  • Version 1.1: 2023-09-20
    Changes: Author supporting evidence, Data collection, Database references, Structure summary
  • Version 1.2: 2024-02-07
    Changes: Author supporting evidence, Refinement description