7RPJ
Cryo-EM structure of murine Dispatched NNN mutant
- PDB DOI: https://doi.org/10.2210/pdb7RPJ/pdb
- EM Map EMD-24616: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Mus musculus
- Expression System: Homo sapiens
- Mutation(s): Yes 
- Membrane Protein: Yes  OPMPDBTMMemProtMD
- Deposited: 2021-08-03 Released: 2021-10-27 
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Howard Hughes Medical Institute (HHMI)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.20 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein dispatched homolog 1 | 1,352 | Mus musculus | Mutation(s): 3  Gene Names: Disp1, Disp, Dispa, Icb, Icbins Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for Q3TDN0 (Mus musculus) Explore Q3TDN0  Go to UniProtKB:  Q3TDN0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q3TDN0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
Y01 (Subject of Investigation/LOI) Query on Y01 | G [auth A] H [auth A] I [auth A] J [auth A] K [auth A] | CHOLESTEROL HEMISUCCINATE C31 H50 O4 WLNARFZDISHUGS-MIXBDBMTSA-N | |||
NAG Query on NAG | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.20 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | cryoSPARC | |
MODEL REFINEMENT | PHENIX | |
MODEL REFINEMENT | ISOLDE |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-10-27  Deposition Author(s): Asarnow, D., Wang, Q., Ding, K., Cheng, Y., Beachy, P.A.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01GM102498 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35GM140847 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | S10OD020054 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | S10OD021741 |
Howard Hughes Medical Institute (HHMI) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2021-10-27
Type: Initial release - Version 1.1: 2021-11-10
Changes: Database references - Version 1.2: 2021-11-24
Changes: Database references