7UPB
Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1H1
- PDB DOI: https://doi.org/10.2210/pdb7UPB/pdb
- EM Map EMD-26660: EMDB EMDataResource
- Classification: VIRAL PROTEIN/Immune System
- Organism(s): Henipavirus nipahense, Mus musculus
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2022-04-14 Released: 2023-03-29 
- Funding Organization(s): Welch Foundation
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.00 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 1.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Fusion glycoprotein F0 | 475 | Henipavirus nipahense | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q9IH63 (Nipah virus) Explore Q9IH63  Go to UniProtKB:  Q9IH63 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9IH63 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fab 1H1 heavy chain | 120 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fab 1H1 light chain | E, F, I [auth L] | 106 | Mus musculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG (Subject of Investigation/LOI) Query on NAG | J [auth A], K [auth D], L [auth G] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.00 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Entry History & Funding Information
Deposition Data
- Released Date: 2023-03-29  Deposition Author(s): Byrne, P.O., McLellan, J.S.
Funding Organization | Location | Grant Number |
---|---|---|
Welch Foundation | United States | F-0003-19620604 |
Revision History (Full details and data files)
- Version 1.0: 2023-03-29
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Database references