7WQU

FeoC from Klebsiella pneumoniae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.20 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.221 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

FeoC from Klebsiella pneumoniae uses its iron sulfur cluster to regulate the GTPase activity of the ferrous iron channel.

Hsueh, K.L.Yu, L.K.Hsieh, Y.C.Hsiao, Y.Y.Chen, C.J.

(2023) Biochim Biophys Acta Proteins Proteom 1871: 140855-140855

  • DOI: https://doi.org/10.1016/j.bbapap.2022.140855
  • Primary Citation of Related Structures:  
    7WQU

  • PubMed Abstract: 

    Bacteria depend on the ferrous iron transport (Feo) system for the uptake of ferrous iron (Fe 2+ ). The Feo system is crucial for colonization and virulence of pathogens. In γ-proteobacteria, the system consists of FeoA, FeoB, and FeoC. The function of FeoA remains unknown. FeoB likely forms the channel, whose regulation has been suggested to involve its GTPase domain (part of its NFeoB domain). FeoC from Klebsiella pneumonia was found to contain a [4Fe4S] cofactor, whose presence was speculated to enhance the GTPase activity of FeoB (Hsueh, K.-L., et al., J. Bacteriol. 2013 195(20): 4726-34). We present results here that support and extend that hypothesis. We monitored the GTPase activity of FeoB by NMR spectroscopy and found that the presence of 7% FeoC-[4Fe-4S] 3+ (the highest level of cofactor achieved in vitro) increased the GTPase rate of NFeoB by 3.6-fold over NFeoB. The effect depends on the oxidation state of the cluster; with reduction of the cluster to [4Fe-4S] 2+ the GTPase greatly decreased the GTPase rate. From the effects of point mutations in FeoC on GTPase rates, we conclude that Lys62 and Lys68 on FeoC each contribute to increased GTPase activity on NFeoB. Mutation of Thr37 of NFeoB to Ser nearly abolished the GTPase activity. The GTPase activity of the isolated K. pneumoniae NFeoB-FeoC complex (NFeoBC) was found to be higher in KCl than in NaCl solution. We solved the X-ray structure of the NFeoBC crystallized from KCl and compared it with a prior X-ray structure crystalized from NaCl. We propose a hypothesis, consistent with these results, to explain the factors that influence the GTPase activity. Bacteria may use the oxygen-sensitive cluster as a sensor to up-regulate the gate closing speed.


  • Organizational Affiliation

    Institute of Biomedical Sciences, Academia Sinica, Taipei 11574, Taiwan; Department of Animal Science and Biotechnology, Tunghai University, Taichung 407224, Taiwan. Electronic address: ren.shiue@gmail.com.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferrous iron transport protein B267Klebsiella pneumoniaeMutation(s): 0 
Gene Names: feoB_3NCTC13465_06046
UniProt
Find proteins for A0A2X3IBQ3 (Klebsiella pneumoniae)
Explore A0A2X3IBQ3 
Go to UniProtKB:  A0A2X3IBQ3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2X3IBQ3
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Probable [Fe-S]-dependent transcriptional repressor85Klebsiella pneumoniaeMutation(s): 0 
Gene Names: 
UniProt
Find proteins for W9BMW4 (Klebsiella pneumoniae)
Explore W9BMW4 
Go to UniProtKB:  W9BMW4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW9BMW4
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.20 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.221 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 176.292α = 90
b = 176.292β = 90
c = 176.292γ = 90
Software Package:
Software NamePurpose
HKL-2000data scaling
REFMACrefinement
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, Taiwan)Taiwan--

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-01
    Type: Initial release
  • Version 1.1: 2023-05-03
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description