7YCS

Heterotetramer of Antitoxin PrpA together with Toxin PrpT from Pseudoalteromonas rubra


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.172 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural insights into the regulatory mechanism of conjugative plasmid replication by PrpTA toxin-antitoxin system in Pseudoalteromonas rubra

Wang, C.C.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ToxinA,
D [auth C]
99Pseudoalteromonas rubraMutation(s): 0 
Gene Names: AT705_24520
UniProt
Find proteins for A0A0U2Y7P6 (Pseudoalteromonas rubra)
Explore A0A0U2Y7P6 
Go to UniProtKB:  A0A0U2Y7P6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U2Y7P6
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Antitoxin ParDC [auth B],
B [auth D]
106Pseudoalteromonas rubraMutation(s): 0 
Gene Names: AT705_24525
UniProt
Find proteins for A0A0U3H4C4 (Pseudoalteromonas rubra)
Explore A0A0U3H4C4 
Go to UniProtKB:  A0A0U3H4C4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U3H4C4
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.172 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.782α = 90
b = 83.085β = 91.66
c = 56.489γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
PHASERphasing
BUCCANEERmodel building
PHENIXrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China--

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-21
    Type: Initial release