7ZC8 | pdb_00007zc8

Crystal structure of the C-terminal domain of FusB, a TonB homologue


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 
    0.240 (Depositor), 0.247 (DCC) 
  • R-Value Work: 
    0.212 (Depositor), 0.218 (DCC) 
  • R-Value Observed: 
    0.213 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Receptor-substrate competition for the TonB homolog FusB suggests a model for ferredoxin import.

Wojnowska, M.Flores, V.Yelland, T.Fisher, S.R.Bogucka, A.Stott, K.Walker, D.

(2026) J Biological Chem 302: 113121-113121

  • DOI: https://doi.org/10.1016/j.jbc.2026.113121
  • Primary Citation Related Structures: 
    7ZC8, 9HI3

  • PubMed Abstract: 

    TonB-dependent uptake systems of Gram-negative bacterial pathogens constitute prominent virulence factors, allowing nutrients - primarily siderophore-bound iron - to cross the highly impermeable outer membrane (OM). Remarkably, the ferredoxin uptake system (Fus) of certain soft rot plant pathogens imports an entire host protein into the periplasm and extracts its bound iron for growth. The inner membrane protein FusB, a TonB homologue, plays two roles in facilitating import. First, like other TonBs, it remodels the globular plug domain obstructing the lumen of the OM receptor FusA to allow ferredoxin passage. Unusually for a TonB protein, FusB then interacts directly with the FusA-bound ferredoxin substrate to facilitate its transport into the periplasm. Here we describe structures of the FusB homodimer as well as the FusB-ferredoxin complex and, using biophysical, biochemical and mutagenesis approaches, we determine the key features of the binding interfaces formed by FusB with FusA and ferredoxin. The C-terminal domain of FusB (FusB-CTD) exists in a monomer-dimer equilibrium in vitro, with the homodimer stabilised by an intermolecular R241-D322 salt bridge. The "FusB-box" of FusA interacts with monomeric FusB-CTD, and FusA D53 outcompetes FusB D322 to bind R241. Upon ferredoxin binding, FusB-CTD undergoes a structural rearrangement, expanding its β-sheet from three to four strands. In agreement with the proposed sequence of events, ferredoxin binding displaces FusA from FusB with R241 forming an intramolecular salt bridge with D322 to stabilise the newly formed β-hairpin of FusB. We propose a mechanistic model for ferredoxin import where FusB R241 acts as a molecular switch.


  • Organizational Affiliation
    • Department of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom. Electronic address: mw915@cam.ac.uk.

Macromolecule Content 

  • Total Structure Weight: 19.56 kDa 
  • Atom Count: 1,416 
  • Modeled Residue Count: 173 
  • Deposited Residue Count: 174 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein TonBA [auth B],
B [auth A]
87Pectobacterium carotovorumMutation(s): 0 
Gene Names: RC98_15010

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free:  0.240 (Depositor), 0.247 (DCC) 
  • R-Value Work:  0.212 (Depositor), 0.218 (DCC) 
  • R-Value Observed: 0.213 (Depositor) 
Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 94.661α = 90
b = 94.661β = 90
c = 58.246γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-17
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description
  • Version 1.2: 2026-06-10
    Changes: Database references, Structure summary