Photosystem I assembly intermediate of Avena sativa
Naschberger, A., Amunts, A., Nelson, N.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A1 | 750 | Avena sativa | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for A0A3G1AUL2 (Avena sativa) Explore A0A3G1AUL2 Go to UniProtKB: A0A3G1AUL2 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A3G1AUL2 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A2 | 734 | Avena sativa | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for A0A3G1AZK6 (Avena sativa) Explore A0A3G1AZK6 Go to UniProtKB: A0A3G1AZK6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A3G1AZK6 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I iron-sulfur center | 81 | Avena sativa | Mutation(s): 0 EC: 1.97.1.12 Membrane Entity: Yes | ![]() | |
UniProt | |||||
Find proteins for A0A3G1ATU7 (Avena sativa) Explore A0A3G1ATU7 Go to UniProtKB: A0A3G1ATU7 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A3G1ATU7 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit II | 206 | Avena sativa | Mutation(s): 0 | ![]() | |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IV | 143 | Avena sativa | Mutation(s): 0 | ![]() | |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VI | F [auth H] | 94 | Avena sativa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 7 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VIII | G [auth I] | 36 | Avena sativa | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for A0A3G1AZM6 (Avena sativa) Explore A0A3G1AZM6 Go to UniProtKB: A0A3G1AZM6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A3G1AZM6 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 8 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XI | H [auth L] | 213 | Avena sativa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 9 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit III | I [auth F] | 178 | Avena sativa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 10 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit V | J [auth G] | 144 | Avena sativa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 11 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IX | K [auth J] | 52 | Avena sativa | Mutation(s): 0 Membrane Entity: Yes | ![]() |
UniProt | |||||
Find proteins for A0A3G1AZP2 (Avena sativa) Explore A0A3G1AZP2 Go to UniProtKB: A0A3G1AZP2 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A3G1AZP2 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 12 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit X | L [auth K] | 130 | Avena sativa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 13 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein 1, chloroplastic | M [auth 1] | 242 | Avena sativa | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for A0A482JYH1 (Avena sativa) Explore A0A482JYH1 Go to UniProtKB: A0A482JYH1 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A482JYH1 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 14 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein 2, chloroplastic | N [auth 2] | 207 | Avena sativa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 15 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein 3, chloroplastic | O [auth 3] | 269 | Avena sativa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 16 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein 4, chloroplastic | P [auth 4] | 256 | Avena sativa | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 14 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | DI [auth 4], PD [auth B], ZE [auth J] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CHL (Subject of Investigation/LOI) Query on CHL | FG [auth 2] GF [auth 1] GG [auth 2] HG [auth 2] LF [auth 1] | CHLOROPHYLL B C55 H70 Mg N4 O6 MWVCRINOIIOUAU-UYSPMESUSA-M | |||
CLA (Subject of Investigation/LOI) Query on CLA | AA [auth A] AB [auth A] AC [auth B] AD [auth B] AE [auth L] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
CL0 (Subject of Investigation/LOI) Query on CL0 | Q [auth A], WD [auth H] | CHLOROPHYLL A ISOMER C55 H72 Mg N4 O5 VIQFHHZSLDFWDU-DVXFRRMCSA-M | |||
LMG (Subject of Investigation/LOI) Query on LMG | AI [auth 4], BI [auth 4], OE [auth F], UB [auth A] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
LHG Query on LHG | JB [auth A] KB [auth A] QD [auth B] RD [auth B] RG [auth 2] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
XAT (Subject of Investigation/LOI) Query on XAT | QG [auth 2], VF [auth 1] | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL C40 H56 O4 SZCBXWMUOPQSOX-WVJDLNGLSA-N | |||
QDL (Subject of Investigation/LOI) Query on QDL | YH [auth 4] | Antheraxanthin C40 H56 O3 OFNSUWBAQRCHAV-OYQUVCAXSA-N | |||
C7Z (Subject of Investigation/LOI) Query on C7Z | AG [auth 1] | (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol C40 H56 O2 JKQXZKUSFCKOGQ-ANDPMPNWSA-N | |||
LUT (Subject of Investigation/LOI) Query on LUT | GH [auth 3] HH [auth 3] PG [auth 2] UF [auth 1] WE [auth J] | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL C40 H56 O2 KBPHJBAIARWVSC-NSIPBSJQSA-N | |||
BCR (Subject of Investigation/LOI) Query on BCR | BF [auth K] DE [auth L] EE [auth L] EF [auth K] FE [auth F] | BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N | |||
LMU (Subject of Investigation/LOI) Query on LMU | CI [auth 4] EI [auth 4] FF [auth 1] FI [auth 4] HE [auth F] | DODECYL-ALPHA-D-MALTOSIDE C24 H46 O11 NLEBIOOXCVAHBD-YHBSTRCHSA-N | |||
PQN (Subject of Investigation/LOI) Query on PQN | HB [auth A], ID [auth B] | PHYLLOQUINONE C31 H46 O2 MBWXNTAXLNYFJB-NKFFZRIASA-N | |||
SF4 (Subject of Investigation/LOI) Query on SF4 | QB [auth A], TD [auth C], UD [auth C] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
The Swedish Foundation for Strategic Research | Sweden | ARC19-0051 |
Knut and Alice Wallenberg Foundation | Sweden | 2018.0080 |
Israel Science Foundation | Israel | 569/17 |