Download MendeleyPol-gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity
Park, J., Herrmann, G.K., Mitchell, P.G., Sherman, M.B., Yin, Y.W.(2023) Nat Struct Mol Biol
8D33
Human mitochondrial DNA polymerase gamma ternary complex with GC basepair
- PDB DOI: https://doi.org/10.2210/pdb8D33/pdb
- EM Map EMD-27154: EMDB EMDataResource
- Classification: TRANSFERASE/DNA
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Insect cell expression vector pTIE1
- Mutation(s): No
- Deposited: 2022-05-31 Released: 2023-05-24
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.46 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA polymerase subunit gamma-1 | A | 1,245 | Homo sapiens | Mutation(s): 0 Gene Names: POLG, MDP1, POLG1, POLGA EC: 2.7.7.7 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P54098 (Homo sapiens) Explore P54098 Go to UniProtKB: P54098 | |||||
PHAROS: P54098 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P54098 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA polymerase subunit gamma-2, mitochondrial | B, C | 491 | Homo sapiens | Mutation(s): 0 Gene Names: POLG2, MTPOLB |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UHN1 (Homo sapiens) Explore Q9UHN1 Go to UniProtKB: Q9UHN1 | |||||
PHAROS: Q9UHN1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UHN1 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(P*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*C)-3') | D [auth P] | 24 | synthetic construct |  | |
Protein Feature ViewExpand | |||||
| |||||
Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (25-MER) | E [auth T] | 28 | synthetic construct |  | |
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DCP (Subject of Investigation/LOI) Query on DCP | G [auth A] | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE C9 H16 N3 O13 P3 RGWHQCVHVJXOKC-SHYZEUOFSA-N |  | Ligand Interaction | |
| CA (Subject of Investigation/LOI) Query on CA | F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.46 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | cryoSPARC | 3.3.2 |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | AI134611 |
Revision History (Full details and data files)
- Version 1.0: 2023-05-24
Type: Initial release
