8QYI

OleP in complex with lithocholic acid in high salt crystallization conditions


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.176 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

OleP in complex with lithocolic acid in high salt crystallization conditions

Fata, F.Costanzo, A.Freda, I.Gugole, E.Bulfaro, G.Barbizzi, L.Di Renzo, M.Savino, C.Vallone, B.Montemiglio, L.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome P-450
A, B, C, D, E
A, B, C, D, E, F
398Streptomyces antibioticusMutation(s): 0 
Gene Names: oleP
UniProt
Find proteins for Q59819 (Streptomyces antibioticus)
Explore Q59819 
Go to UniProtKB:  Q59819
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ59819
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

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EB [auth C]
FA [auth B]
FC [auth D]
G [auth A]
ID [auth F]
EB [auth C],
FA [auth B],
FC [auth D],
G [auth A],
ID [auth F],
VC [auth E]
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
4OA (Subject of Investigation/LOI)
Query on 4OA

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FB [auth C]
GA [auth B]
GC [auth D]
H [auth A]
JD [auth F]
FB [auth C],
GA [auth B],
GC [auth D],
H [auth A],
JD [auth F],
WC [auth E]
(3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid
C24 H40 O3
SMEROWZSTRWXGI-HVATVPOCSA-N
FMT
Query on FMT

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AA [auth A]
AB [auth B]
AC [auth C]
AD [auth E]
BA [auth A]
AA [auth A],
AB [auth B],
AC [auth C],
AD [auth E],
BA [auth A],
BB [auth B],
BC [auth C],
BD [auth E],
CA [auth A],
CB [auth B],
CC [auth C],
CD [auth E],
DA [auth A],
DC [auth C],
DD [auth E],
ED [auth E],
FD [auth E],
GB [auth C],
GD [auth E],
HA [auth B],
HB [auth C],
HC [auth D],
I [auth A],
IA [auth B],
IB [auth C],
IC [auth D],
J [auth A],
JA [auth B],
JB [auth C],
JC [auth D],
K [auth A],
KA [auth B],
KB [auth C],
KC [auth D],
KD [auth F],
L [auth A],
LA [auth B],
LB [auth C],
LC [auth D],
LD [auth F],
M [auth A],
MA [auth B],
MB [auth C],
MC [auth D],
MD [auth F],
N [auth A],
NA [auth B],
NB [auth C],
NC [auth D],
ND [auth F],
O [auth A],
OA [auth B],
OB [auth C],
OC [auth D],
OD [auth F],
P [auth A],
PA [auth B],
PB [auth C],
PC [auth D],
PD [auth F],
Q [auth A],
QA [auth B],
QB [auth C],
QC [auth D],
QD [auth F],
R [auth A],
RA [auth B],
RB [auth C],
RC [auth D],
RD [auth F],
S [auth A],
SA [auth B],
SB [auth C],
SC [auth D],
SD [auth F],
T [auth A],
TA [auth B],
TB [auth C],
TC [auth D],
TD [auth F],
U [auth A],
UA [auth B],
UB [auth C],
UD [auth F],
V [auth A],
VA [auth B],
VB [auth C],
W [auth A],
WA [auth B],
WB [auth C],
X [auth A],
XA [auth B],
XB [auth C],
XC [auth E],
Y [auth A],
YA [auth B],
YB [auth C],
YC [auth E],
Z [auth A],
ZA [auth B],
ZB [auth C],
ZC [auth E]
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
NA
Query on NA

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DB [auth B]
EA [auth A]
EC [auth C]
HD [auth E]
UC [auth D]
DB [auth B],
EA [auth A],
EC [auth C],
HD [auth E],
UC [auth D],
VD [auth F]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.176 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 249.373α = 90
b = 109.269β = 129.6
c = 160.658γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release