Structure and dynamics of the active site of hen egg-white lysozyme from atomic resolution neutron crystallography.
Ramos, J., Laux, V., Mason, S.A., Lemee, M.H., Bowler, M.W., Diederichs, K., Haertlein, M., Forsyth, V.T., Mossou, E., Larsen, S., Langkilde, A.E.(2025) Structure 33: 136-148.e3
- PubMed: 39577430
- DOI: https://doi.org/10.1016/j.str.2024.10.030
- Primary Citation of Related Structures:
8RLF, 8RLG, 8RLH, 8RLI - PubMed Abstract:
Hen egg-white lysozyme (HEWL) is a widely used model protein in crystallographic studies and its enzymatic mechanism has been extensively investigated for decades. Despite this, the interaction between the reaction intermediate and the catalytic Asp52, as well as the orientation of Asn44 and Asn46 side chains, remain ambiguous. Here, we report the crystal structures of perdeuterated HEWL and D 2 O buffer-exchanged HEWL from 0.91 and 1.1 Å resolution neutron diffraction data, respectively. These structures were obtained at room temperature and acidic pH, representing the active state of the enzyme. The unambiguous assignment of hydrogen positions based on the neutron scattering length density maps elucidates the roles of Asn44, Asn46, Asn59, and nearby water molecules in the stabilization of Asp52. Additionally, the identification of hydrogen positions reveals unique details of lysozyme's folding, hydrogen (H)/deuterium (D) exchange, and side chain disorder.
Organizational Affiliation:
Institut Laue-Langevin, 71 avenue des Martyrs CS20156, 38042 Grenoble Cedex, France; Partnership for Structural Biology (PSB), 71 avenue des Martyrs CS 90181, 38042 Grenoble Cedex, France; Department of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, 2100 Copenhagen, Denmark. Electronic address: ramosj@mbg.au.dk.