8RP7 | pdb_00008rp7

Glutaminase subunit of aminodeoxychorismate synthase from Escherichia coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 
    0.268 (Depositor), 0.274 (DCC) 
  • R-Value Work: 
    0.211 (Depositor) 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 8RP7

This is version 1.1 of the entry. See complete history

Literature

Activity Regulation of a Glutamine Amidotransferase Bienzyme Complex by Substrate-Induced Subunit Interface Expansion.

Funke, F.J.Schlee, S.Bento, I.Bourenkov, G.Sterner, R.Wilmanns, M.

(2025) ACS Catal 15: 4359-4373

  • DOI: https://doi.org/10.1021/acscatal.4c07438
  • Primary Citation Related Structures: 
    8RP0, 8RP1, 8RP2, 8RP6, 8RP7

  • PubMed Abstract: 

    Glutamine amidotransferases are multienzyme machineries in which reactive ammonia is generated by a glutaminase and then transferred through a sequestered protein tunnel to a synthase active site for incorporation into diverse metabolites. To avoid wasteful metabolite consumption, there is a requirement for synchronized catalysis, but any generally applicable mechanistic insight is still lacking. As synthase activity depends on glutamine turnover, we investigated possible mechanisms controlling glutaminase catalysis using aminodeoxychorismate synthase involved in folate biosynthesis as a model. By analyzing this system in distinct states of catalysis, we found that incubation with glutamine leads to a subunit interface expansion by one-third of its original area. These changes completely enclose the glutaminase active site for sequestered catalysis and the subsequent transport of volatile ammonia to the synthase active site. In view of similar rearrangements in other glutamine amidotransferases, our observations may provide a general mechanism for the catalysis synchronization of this multienzyme family.


  • Organizational Affiliation
    • Institute of Biophysics and Physical Biochemistry, Regensburg Center for Biochemistry, University of Regensburg, Regensburg 93040, Germany.

Macromolecule Content 

  • Total Structure Weight: 62.73 kDa 
  • Atom Count: 4,426 
  • Modeled Residue Count: 567 
  • Deposited Residue Count: 567 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Aminodeoxychorismate synthase component 2A [auth AAA],
B [auth BBB],
C [auth CCC]
189Escherichia coliMutation(s): 0 
Gene Names: pabAb3360JW3323
EC: 2.6.1.85
UniProt
Find proteins for P00903 (Escherichia coli (strain K12))
Explore P00903 
Go to UniProtKB:  P00903
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00903
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free:  0.268 (Depositor), 0.274 (DCC) 
  • R-Value Work:  0.211 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 36.784α = 90
b = 115.582β = 101.062
c = 63.538γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
H2020 Marie Curie Actions of the European CommissionEuropean Union664726

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-29
    Type: Initial release
  • Version 1.1: 2025-05-28
    Changes: Database references