Download MendeleyAllosteric modulation of ryanodine receptor RyR1 by nucleotide derivatives
Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Alvarado, F.J., Van Petegem, F., Subramaniam, S.(2023) Structure
8SEN
Cryo-EM Structure of RyR1
- PDB DOI: https://doi.org/10.2210/pdb8SEN/pdb
- EM Map EMD-40422: EMDB EMDataResource
- Classification: TRANSPORT PROTEIN
- Organism(s): Oryctolagus cuniculus, Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-04-10 Released: 2023-05-24
- Funding Organization(s): Canada Excellence Research Chair Award, Canadian Institutes of Health Research (CIHR)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.49 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ryanodine receptor 1 | A, B, C, D | 5,037 | Oryctolagus cuniculus | Mutation(s): 0 Gene Names: RYR1 |  |
UniProt | |||||
Find proteins for P11716 (Oryctolagus cuniculus) Explore P11716 Go to UniProtKB: P11716 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P11716 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B | E, F, G, H | 350 | Homo sapiens | Mutation(s): 0 Gene Names: FKBP1B, FKBP12.6, FKBP1L, FKBP9, OTK4 EC: 2.5.1.18 (PDB Primary Data), 5.2.1.8 (PDB Primary Data) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P08515 (Schistosoma japonicum) Explore P08515 Go to UniProtKB: P08515 | |||||
Find proteins for P68106 (Homo sapiens) Explore P68106 Go to UniProtKB: P68106 | |||||
PHAROS: P68106 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | P68106P08515 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | I [auth A], J [auth B], K [auth C], L [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.49 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2023-05-24 Deposition Author(s): Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Canada Excellence Research Chair Award | Canada | -- |
| Canadian Institutes of Health Research (CIHR) | Canada | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-05-24
Type: Initial release
