8ULH | pdb_00008ulh

Fab of RSV neutralizing antibody 1G12

• PDB DOI: https://doi.org/10.2210/pdb8ULH/pdb

• Classification: VIRAL PROTEIN/IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2023-10-16 Released: 2024-11-06 
• Deposition Author(s): Harshbarger, W.D., Andreano, E., Malito, E.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.69 Å
• R-Value Free: 
  0.228 (Depositor), 0.239 (DCC) 
• R-Value Work: 
  0.194 (Depositor), 0.207 (DCC) 
• R-Value Observed: 
  0.195 (Depositor) 

Starting Model: in silico

Literature

Structural and functional properties of monoclonal and vaccine-induced antibodies targeting epitopes of emerging RSV variants

Xian, Y., Andreano, E., Tian, S., Phung, E., Garbinski, L., Biancucci, M., Lofano, G., Mallett, C.P., Balsaraf, A., Huang, Y., Buricchi, F., Finco, O., Rappuoli, R., Bottomley, M.J., Chandramouli, S., Warter, L., Williams, J., Malito, E., Harshbarger, W.D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 50.66 kDa 
• Atom Count: 3,946 
• Modeled Residue Count: 428 
• Deposited Residue Count: 471 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1G12 Fab heavy chain	A [auth H]	257	Homo sapiens	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
1G12 Fab light chain	B [auth L]	214	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.69 Å
• R-Value Free:  0.228 (Depositor), 0.239 (DCC) 
• R-Value Work:  0.194 (Depositor), 0.207 (DCC) 
• R-Value Observed: 0.195 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.456	α = 90
b = 82.563	β = 90
c = 112.234	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data reduction
PHENIX	refinement
HKL-3000	data scaling
PHENIX	phasing
PHENIX	refinement
SERGUI	data collection

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-11-06 
Deposition Author(s): Harshbarger, W.D., Andreano, E., Malito, E.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-11-06
  Type: Initial release